Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

1136904 .. 1143901

Gene Structure 6998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGTCCACTCTCTTCCTCTCCCTCCCTACTTTCCCCTCCCAATTCCACCACCCAAACGACGCCGTTTCCGCTTCCCTAACCCTCCGCGCCTCCGCCGCCGTATCCGCCCCCGAGAAGCGGACCCGACGCAAGAAGCGGCAGCCGAAGCGCGGCGACGATGACTCCTCCCCGTCCTCCTCGCCCTTATCCTCCTCCTCCGCCGCCGAGAAGAGCCTCCGCTTCACCTTCATGGAGGAGCTCATGTCCCGGGCCCGCAACCGCGACGCCGTCGGCGTCTCCGACGTCATCTACGACATGGTCGCCGCCGGCCTCACCCCCGGCCCTCGCTCCTTCCACGGATTGGTCGTCGCTCACGCCATGAACGGCGACGCCGAGTCCGCGATGCAAACGTTGAGGAGGGAGCTCAGTTCGGGGCTTCGTCCTCTCCACGAAACGTTTATCGCCTTGATTAGGTTGTTTGGCTCAAAAGGTCGAGCTACGAGGGGGCTGGAAATCCTTGCAGCCATGGAGAAATTAAATTACGACATTCGCCAAGCTTGGATACTTCTCGTTGAGGAGCTTGTTCGGACACGCTATTTGGAAGATGCCAACAGGGTGTTCTTGAAGGGTGCCAAAGGTGGGCTGAGAGCTACGGATGAGGCGTATGATCTTCTTATAGTGGAGGACTGTAAAGTCGGGGATCATTCTAATGCATTGGAAATTGCTTATGAGATGGAGGCAGCTGGGCGGATGGCAACAACTTTTCATTTCAATTGCCTTCTTAGTGTGCAGGCTACTTGTGGAATTCCTGAAATAGCTTTTGCTACGTTTGAGAACATGCAGTATGGAGAAGAATACATGAAACCTGATACAGAGACATATAATTGGGTGATTCAAGCATATACCAGAGCTGAATCTTATGATAGAGTGCAAGATGTTGCTGAGTTACTTGGCCTGATGGTTGAAGATCACAAGCGTTTGCAGCCTAATGTGAAAACCTATGCGTTGCTGATTGAGTGCTTTACCAAGTATTGTGTAGTGCGAGAGGCAATACGGCATTTTCGTGCTCTCAAATTTTTTGAAGGAGGGACAAAAGTTTTACATAATGAAGGAAACTTTGGGGACCCCTTATCTTTGTATCTTCGAGCTTTATGTCGAGAAGGAAGAGTGGTTGAGTTGCTAGAAGCTTTAGAAGCCATGGCCCAAGACAACCAGCCAATTCCACCGCGAGCCATGATATTGAGCAGAAAGTATCGAACCCTGGTGAGCTCATGGATTGAACCTTTGCAAGAGGAAGCTGAACTTGGATATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACCCCACTAGATCCTGACGCTGATGGTTTTATATATTCTAACCCTATGGAAACCTCATTCAAACAACGGTGTCTTGAGGATTGGAAGACACACCACAGAAAGCTCTTGAGAACTTTACTGAATGAAGGACTTGCAGCTTTAGGGGATGCATCTGAATCAGATTATATTAGAGTAGAGAATAGGTTAAGGAAGATCATAAAGGGTCCTGACCAGAGTGTTTTAAAGCCCAAAGCTGCTAGTAAGATGGTAGTATCTGAACTGAAGGAAGAACTAGAAGCTCAGGATCTGCCAACTGATGGAACTAGAAATGTGCTTTACCAGCGAGTCCAAAAAGCAAGGAGAATAAATCGCTCTCGTGGTCGACCCCTCTGGGTTCCTCCTGTGGAGGAGGAGGAAGAAGAGGTTGATGAAGAGCTGGATGAACTAATCTCAAGGATCAAGCTGGAAGAAGGGAATACAGAGTTCTGGAAACGCCGTTTCCTTGGAGAAGGCTTCAGCAGCGATCAGGAAAAGCAATTAGATAGTGGCAAACTTGAACCTCTAGATGTCACAGATAGTGTCAATGTTGTAGATGTGGCGAAAGAGGTTGAAGATGATGAGGCTGAGGAAGCTGACGATGAGGATGAGGATGACAATAATGATAATGATGACGATGACGACGACGACGACGACGAAGAGGAGGAGGAGGAAGTAGAGGTGGGGGTAGAAGTAGAACAAGCTGAGAGACAAGATGTAGAAAGGGTGAAGCAAAAGGAAAATGAAGCTAAGAAGCCTCTTCAAATGATTGGAGTACAGTTGTTAAAAGATTCTGACCAGACGAGTACATCATCTAAAAAGTCAAGGAGAAGAGCTTCTCGAAGAATATCAGCTGAGGATGATGCTGATGATGACTGGTTTCCTGAGGATATCTTTGAGGCATTTAAGGAGCTGAGGAAAAGGAGGATCTTTGATGAATCTGACATGTATACAATCGCTGATGCTTGGGGTTGGACATGGGAGAGAGAATACAAGAATAGACCTCCAAGAAGATGGTCACAAGAATGGGAAGTTGAGTTGGCAATTAAAGTTATGCTGAAGGTGATGGAATTGGGGGGAACACCCACAATTGGGGATTGTGCCATGATTTTGCGTGCAGCCATAAAGGCTCCTCTCCCTTCAGCTTTCTTGAAGATCTTACAGACTACACATGGTCTTGGCTATGTATTTGGCAGTCCACTCTATGATGAAATTATCTCGCTATGCCTTGATCTTGGAGAGCTGGATGCAGCCGTTGCCATTGTTGCAGACTTGGAGACCACTGGGATCACAGTCCCAGATGAGACCTTGGACAGGGTAATTTCTGCTAAACGGACAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

909

Amino Acids

103.25

Weight (kDa)

4.85

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	537 - 570	3.3e-08	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
AatII	GACGTC	1 cut(s)	285
AccB1I	GGYRCC	2 cut(s)	608, 1354
AccB7I	CCANNNNNTGG	2 cut(s)	340, 1667
AccI	GTMKAC	2 cut(s)	1732, 2336
AccII	CGCG	5 cut(s)	87, 150, 261, 380, 1207
AclI	AACGTT	2 cut(s)	389, 434
AclWI	GGATC	6 cut(s)	687, 1376, 1662, 1814, 2321, 2681
AcoI	YGGCCR	1 cut(s)	1305
AcsI	RAATTY	2 cut(s)	783, 1052
AcuI	CTGAAG	4 cut(s)	1652, 1849, 2465, 2511
AcyI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
AfaI	GTAC	3 cut(s)	1313, 2163, 2194
AflIII	ACRYGT	1 cut(s)	2331
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	1239, 1307
AjuI	GAANNNNNNNTTGG	6 cut(s)	581, 613, 1080, 1112, 1266, 1298
Alw21I	GWGCWC	4 cut(s)	240, 405, 1048, 1250
Alw26I	GTCTC	5 cut(s)	280, 848, 2089, 2657, 2684
AlwI	GGATC	6 cut(s)	687, 1376, 1662, 1814, 2321, 2681
AlwNI	CAGNNNCTG	1 cut(s)	1657
Ama87I	CYCGRG	2 cut(s)	110, 246
AoxI	GGCC	6 cut(s)	249, 307, 319, 931, 1179, 1305
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	9 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2504, 2636
ApoI	RAATTY	2 cut(s)	783, 1052
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	2221
AspLEI	GCGC	2 cut(s)	89, 150
AspS9I	GGNCC	7 cut(s)	120, 249, 250, 320, 1102, 1180, 1574
AsuC2I	CCSGG	3 cut(s)	247, 248, 318
AsuHPI	GGTGA	7 cut(s)	214, 304, 880, 1255, 1349, 2125, 2461
AvaI	CYCGRG	2 cut(s)	110, 246
AvaII	GGWCC	3 cut(s)	120, 1102, 1574
AxyI	CCTNAGG	1 cut(s)	2271
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	1307
BanI	GGYRCC	2 cut(s)	608, 1354
BanII	GRGCYC	4 cut(s)	240, 253, 405, 1250
BauI	CACGAG	1 cut(s)	1725
BbsI	GAAGAC	1 cut(s)	1463
Bbv12I	GWGCWC	4 cut(s)	240, 405, 1048, 1250
BbvCI	CCTCAGC	3 cut(s)	1974, 2241, 2300
BbvI	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
BccI	CCATC	9 cut(s)	706, 724, 931, 1344, 1388, 1609, 1661, 2394, 2446
BceAI	ACGGC	7 cut(s)	47, 83, 251, 379, 1049, 1830, 2624
BciT130I	CCWGG	2 cut(s)	1241, 1309
BciVI	GTATCC	2 cut(s)	112, 534
BcnI	CCSGG	3 cut(s)	247, 248, 318
BcoDI	GTCTC	5 cut(s)	280, 848, 2089, 2657, 2684
BfaI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
BfuI	GTATCC	2 cut(s)	112, 534
BglI	GCCNNNNNGGC	1 cut(s)	2513
BglII	AGATCT	1 cut(s)	2541
Bme1390I	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
Bme18I	GGWCC	3 cut(s)	120, 1102, 1574
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	110, 246
BmgT120I	GGNCC	7 cut(s)	120, 249, 250, 320, 1102, 1180, 1574
BmiI	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
BmrFI	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
BmrI	ACTGGG	1 cut(s)	2679
BmsI	GCATC	7 cut(s)	372, 574, 1507, 1529, 2239, 2338, 2623
BmuI	ACTGGG	1 cut(s)	2679
BpiI	GAAGAC	1 cut(s)	1463
Bpu10I	CCTNAGC	4 cut(s)	1650, 1974, 2241, 2300
BpuEI	CTTGAG	3 cut(s)	1466, 1498, 1786
BpuMI	CCSGG	3 cut(s)	247, 248, 318
BsaHI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
BsaI	GGTCTC	2 cut(s)	2657, 2684
BsaJI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2694
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 227, 257
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	1339, 2267, 2674
Bse21I	CCTNAGG	1 cut(s)	2271
Bse3DI	GCAATG	1 cut(s)	1314
BseBI	CCWGG	2 cut(s)	1241, 1309
BseDI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2694
BseGI	GGATG	8 cut(s)	640, 735, 1522, 1795, 1999, 2005, 2251, 2638
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	9 cut(s)	418, 614, 912, 1664, 1965, 2082, 2232, 2262, 2291
BseNI	ACTGG	3 cut(s)	1339, 2267, 2674
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	2 cut(s)	788, 2523
Bsh1236I	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BshFI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BshNI	GGYRCC	2 cut(s)	608, 1354
BsiHKAI	GWGCWC	4 cut(s)	240, 405, 1048, 1250
BsiHKCI	CYCGRG	2 cut(s)	110, 246
BsiSI	CCGG	3 cut(s)	247, 306, 318
BslFI	GGGAC	4 cut(s)	229, 1081, 1115, 2666
BsmAI	GTCTC	5 cut(s)	280, 848, 2089, 2657, 2684
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	4 cut(s)	229, 1081, 1115, 2666
BsnI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
Bso31I	GGTCTC	2 cut(s)	2657, 2684
BsoBI	CYCGRG	2 cut(s)	110, 246
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
Bsp19I	CCATGG	2 cut(s)	504, 1176
BspANI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BspCNI	CTCAG	9 cut(s)	417, 615, 913, 1663, 1966, 2083, 2233, 2263, 2292
BspFNI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BspLI	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
BspPI	GGATC	6 cut(s)	687, 1376, 1662, 1814, 2321, 2681
BspQI	GCTCTTC	3 cut(s)	203, 1776, 2212
BspT107I	GGYRCC	2 cut(s)	608, 1354
BspTNI	GGTCTC	2 cut(s)	2657, 2684
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	1339, 2267, 2674
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2694
BssNAI	GTATAC	1 cut(s)	2337
BssNI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
BssSI	CACGAG	1 cut(s)	1725
BssT1I	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
Bst1107I	GTATAC	1 cut(s)	2337
Bst2BI	CACGAG	1 cut(s)	1725
Bst2UI	CCWGG	2 cut(s)	1241, 1309
Bst4CI	ACNGT	4 cut(s)	668, 1440, 2166, 2680
Bst6I	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2040, 2151, 2212
BstACI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
BstAPI	GCANNNNNTGC	1 cut(s)	2642
BstC8I	GCNNGC	6 cut(s)	253, 307, 771, 1209, 1346, 2502
BstDSI	CCRYGG	3 cut(s)	334, 504, 1176
BstENI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2698
BstF5I	GGATG	8 cut(s)	640, 735, 1522, 1795, 1999, 2005, 2251, 2638
BstFNI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BstHHI	GCGC	2 cut(s)	89, 150
BstMAI	GTCTC	5 cut(s)	280, 848, 2089, 2657, 2684
BstNI	CCWGG	2 cut(s)	1241, 1309
BstNSI	RCATGY	2 cut(s)	820, 2335
BstSCI	CCNGG	5 cut(s)	245, 246, 316, 1239, 1307
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BstV1I	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
BstV2I	GAAGAC	1 cut(s)	1463
BstX2I	RGATCY	4 cut(s)	1381, 1654, 2313, 2541
BstXI	CCANNNNNNTGG	1 cut(s)	2400
BstYI	RGATCY	4 cut(s)	1381, 1654, 2313, 2541
BstZ17I	GTATAC	1 cut(s)	2337
Bsu36I	CCTNAGG	1 cut(s)	2271
BsuI	GTATCC	2 cut(s)	112, 534
BsuRI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BtgI	CCRYGG	3 cut(s)	334, 504, 1176
BtgZI	GCGATG	2 cut(s)	395, 1363
BtsCI	GGATG	8 cut(s)	640, 735, 1522, 1795, 1999, 2005, 2251, 2638
BtsIMutI	CAGTG	1 cut(s)	2667
Cac8I	GCNNGC	6 cut(s)	253, 307, 771, 1209, 1346, 2502
CaiI	CAGNNNCTG	1 cut(s)	1657
CfoI	GCGC	2 cut(s)	89, 150
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	7 cut(s)	120, 249, 250, 320, 1102, 1180, 1574
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	6 cut(s)	68, 135, 262, 272, 377, 1397
Csp6I	GTAC	3 cut(s)	1312, 2162, 2193
CviQI	GTAC	3 cut(s)	1312, 2162, 2193
DraI	TTTAAA	1 cut(s)	1593
DrdI	GACNNNNNNGTC	1 cut(s)	671
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	1305
Eam1104I	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2040, 2151, 2212
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2040, 2151, 2212
EciI	GGCGGA	4 cut(s)	82, 94, 187, 742
Ecl136II	GAGCTC	3 cut(s)	238, 403, 1248
Eco130I	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
Eco24I	GRGCYC	4 cut(s)	240, 253, 405, 1250
Eco31I	GGTCTC	2 cut(s)	2657, 2684
Eco32I	GATATC	1 cut(s)	2278
Eco47I	GGWCC	3 cut(s)	120, 1102, 1574
Eco53kI	GAGCTC	3 cut(s)	238, 403, 1248
Eco57I	CTGAAG	4 cut(s)	1652, 1849, 2465, 2511
Eco81I	CCTNAGG	1 cut(s)	2271
Eco88I	CYCGRG	2 cut(s)	110, 246
EcoICRI	GAGCTC	3 cut(s)	238, 403, 1248
EcoNI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2698
EcoO109I	RGGNCCY	2 cut(s)	1102, 1574
EcoRI	GAATTC	1 cut(s)	783
EcoRII	CCWGG	2 cut(s)	1239, 1307
EcoRV	GATATC	1 cut(s)	2278
EcoT14I	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
EcoT22I	ATGCAT	2 cut(s)	694, 1522
EcoT38I	GRGCYC	4 cut(s)	240, 253, 405, 1250
ErhI	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
Esp3I	CGTCTC	1 cut(s)	280
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	4 cut(s)	229, 1081, 1115, 2666
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	2 cut(s)	1732, 2336
FokI	GGATG	8 cut(s)	647, 742, 1529, 1802, 2006, 2012, 2258, 2645
FriOI	GRGCYC	4 cut(s)	240, 253, 405, 1250
FspBI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
GlaI	GCGC	2 cut(s)	88, 149
GsaI	CCCAGC	1 cut(s)	726
HaeIII	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
HapII	CCGG	3 cut(s)	247, 306, 318
HgaI	GACGC	6 cut(s)	68, 135, 262, 272, 377, 1397
HhaI	GCGC	2 cut(s)	89, 150
Hin1I	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
Hin6I	GCGC	2 cut(s)	87, 148
HinP1I	GCGC	2 cut(s)	87, 148
HincII	GTYRAC	1 cut(s)	1733
HindII	GTYRAC	1 cut(s)	1733
HindIII	AAGCTT	2 cut(s)	534, 1164
HinfI	GANTC	8 cut(s)	161, 374, 871, 893, 1526, 1695, 2177, 2324
HpaII	CCGG	3 cut(s)	247, 306, 318
HphI	GGTGA	7 cut(s)	214, 304, 880, 1255, 1349, 2125, 2461
Hpy166II	GTNNAC	5 cut(s)	6, 1340, 1733, 2337, 2585
Hpy188I	TCNGA	7 cut(s)	280, 567, 1525, 1531, 1627, 2182, 2329
Hpy8I	GTNNAC	5 cut(s)	6, 1340, 1733, 2337, 2585
HpyCH4III	ACNGT	4 cut(s)	668, 1440, 2166, 2680
HpyCH4IV	ACGT	5 cut(s)	282, 389, 434, 806, 2726
HpySE526I	ACGT	5 cut(s)	282, 389, 434, 806, 2726
Hsp92I	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
HspAI	GCGC	2 cut(s)	87, 148
KflI	GGGWCCC	1 cut(s)	1102
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
LguI	GCTCTTC	3 cut(s)	203, 1776, 2212
LmnI	GCTCC	6 cut(s)	235, 332, 400, 556, 2296, 2521
Lsp1109I	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
LweI	GCATC	7 cut(s)	372, 574, 1507, 1529, 2239, 2338, 2623
MaeI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
MaeII	ACGT	5 cut(s)	282, 389, 434, 806, 2726
MaeIII	GTNAC	3 cut(s)	924, 1918, 2403
MfeI	CAATTG	2 cut(s)	751, 2475
MflI	RGATCY	4 cut(s)	1381, 1654, 2313, 2541
MhlI	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
MlsI	TGGCCA	1 cut(s)	1307
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	3 cut(s)	155, 383, 1704
MmeI	TCCRAC	2 cut(s)	303, 2339
Mox20I	TGGCCA	1 cut(s)	1307
Mph1103I	ATGCAT	2 cut(s)	694, 1522
MroNI	GCCGGC	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	2221
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
MslI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2410
Msp20I	TGGCCA	1 cut(s)	1307
MspA1I	CMGCKG	2 cut(s)	722, 2240
MspI	CCGG	3 cut(s)	247, 306, 318
MspR9I	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
MunI	CAATTG	2 cut(s)	751, 2475
MvaI	CCWGG	2 cut(s)	1241, 1309
MvnI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	3 cut(s)	247, 248, 318
NcoI	CCATGG	2 cut(s)	504, 1176
NgoMIV	GCCGGC	1 cut(s)	305
NlaIV	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
NmeAIII	GCCGAG	2 cut(s)	229, 397
NmuCI	GTSAC	2 cut(s)	1918, 2403
NsiI	ATGCAT	2 cut(s)	694, 1522
NspI	RCATGY	2 cut(s)	820, 2335
PciI	ACATGT	1 cut(s)	2331
PciSI	GCTCTTC	3 cut(s)	203, 1776, 2212
PdiI	GCCGGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	2221
PfeI	GAWTC	5 cut(s)	871, 893, 1526, 2177, 2324
PflFI	GACNNNGTC	2 cut(s)	266, 296
PflMI	CCANNNNNTGG	2 cut(s)	340, 1667
PleI	GAGTC	3 cut(s)	155, 382, 1703
PpsI	GAGTC	3 cut(s)	155, 382, 1703
PpuMI	RGGWCCY	2 cut(s)	1102, 1574
PscI	ACATGT	1 cut(s)	2331
Psp124BI	GAGCTC	3 cut(s)	240, 405, 1250
Psp1406I	AACGTT	2 cut(s)	389, 434
Psp5II	RGGWCCY	2 cut(s)	1102, 1574
Psp6I	CCWGG	2 cut(s)	1239, 1307
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	1239, 1307
PspN4I	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	7 cut(s)	120, 249, 250, 320, 1102, 1180, 1574
PspPPI	RGGWCCY	2 cut(s)	1102, 1574
PstNI	CAGNNNCTG	1 cut(s)	1657
PsuI	RGATCY	4 cut(s)	1381, 1654, 2313, 2541
PsyI	GACNNNGTC	2 cut(s)	266, 296
PvuII	CAGCTG	2 cut(s)	722, 2240
RsaI	GTAC	3 cut(s)	1313, 2163, 2194
RsaNI	GTAC	3 cut(s)	1312, 2162, 2193
RseI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2410
SacI	GAGCTC	3 cut(s)	240, 405, 1250
SalI	GTCGAC	1 cut(s)	1731
SapI	GCTCTTC	3 cut(s)	203, 1776, 2212
SaqAI	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
Sau96I	GGNCC	7 cut(s)	120, 249, 250, 320, 1102, 1180, 1574
SchI	GAGTC	3 cut(s)	155, 383, 1704
ScrFI	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
SduI	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
SfaNI	GCATC	7 cut(s)	372, 574, 1507, 1529, 2239, 2338, 2623
SinI	GGWCC	3 cut(s)	120, 1102, 1574
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2410
SmlI	CTYRAG	3 cut(s)	1445, 1477, 1801
SmoI	CTYRAG	3 cut(s)	1445, 1477, 1801
SspMI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
SstI	GAGCTC	3 cut(s)	240, 405, 1250
StyD4I	CCNGG	5 cut(s)	245, 246, 316, 1239, 1307
StyI	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
TaaI	ACNGT	4 cut(s)	668, 1440, 2166, 2680
TaiI	ACGT	5 cut(s)	285, 392, 437, 809, 2729
TaqI	TCGA	7 cut(s)	472, 1123, 1135, 1234, 1360, 1732, 2227
TatI	WGTACW	2 cut(s)	2161, 2192
TauI	GCSGC	5 cut(s)	98, 139, 153, 203, 305
TfiI	GAWTC	5 cut(s)	871, 893, 1526, 2177, 2324
Tru1I	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
Tru9I	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
TscAI	CASTG	1 cut(s)	2674
TseFI	GTSAC	2 cut(s)	1918, 2403
TseI	GCWGC	9 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2504, 2636
Tsp45I	GTSAC	2 cut(s)	1918, 2403
TspGWI	ACGGA	2 cut(s)	351, 647
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	1 cut(s)	2674
Tth111I	GACNNNGTC	2 cut(s)	266, 296
Van91I	CCANNNNNTGG	2 cut(s)	340, 1667
VpaK11BI	GGWCC	3 cut(s)	120, 1102, 1574
XagI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2698
XapI	RAATTY	2 cut(s)	783, 1052
XbaI	TCTAGA	1 cut(s)	1912
XceI	RCATGY	2 cut(s)	820, 2335
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	2 cut(s)	1732, 2336
XmnI	GAANNNNTTC	1 cut(s)	2221
XspI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
ZraI	GACGTC	1 cut(s)	283
Zsp2I	ATGCAT	2 cut(s)	694, 1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.