Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

53609175 .. 53610718

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTCATATGCATGTGCAAAGCAATTGATCGAAGGCCAGAAAGTATTGAGGTTGTACATACGCTTGCAGCTTGCTGCCTCTCAGATCTACTTCCGGTTCCGGGTTCTGGATTTAAAACTGTAGAACCGACTCAAGCCAGCCTTATGTCTGTCTATATGCTTCAAACTAAGTTGACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTAACTCTGTGCCTATTCCTGATGAGGCAGCTCTATCAGCATTTCAGTACTTCGAAAACGTCAAAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGGGAACCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

130

Amino Acids

14.13

Weight (kDa)

4.92

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	313, 383
AfaI	GTAC	2 cut(s)	57, 296
AfiI	CCNNNNNNNGG	3 cut(s)	101, 107, 221
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	164, 239, 356
AluBI	AGCT	2 cut(s)	71, 278
AluI	AGCT	2 cut(s)	71, 278
AoxI	GGCC	2 cut(s)	35, 241
ApeKI	GCWGC	3 cut(s)	68, 75, 275
ApoI	RAATTY	2 cut(s)	313, 383
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	102
AsuII	TTCGAA	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	62, 80, 287
BcnI	CCSGG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	3 cut(s)	69, 76, 276
BlsI	GCNGC	3 cut(s)	70, 77, 277
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	99, 379
BmrFI	CCNGG	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 107, 221
BseLI	CCNNNNNNNGG	3 cut(s)	101, 107, 221
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	62, 80, 287
BshFI	GGCC	2 cut(s)	37, 243
BsiSI	CCGG	2 cut(s)	95, 101
BslI	CCNNNNNNNGG	3 cut(s)	101, 107, 221
BsnI	GGCC	2 cut(s)	37, 243
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	28, 85
BspANI	GGCC	2 cut(s)	37, 243
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	99, 379
BspT104I	TTCGAA	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	55
BssMI	GATC	2 cut(s)	28, 85
Bst4CI	ACNGT	2 cut(s)	121, 221
BstAUI	TGTACA	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	66, 73, 139
BstDEI	CTNAG	2 cut(s)	82, 168
BstKTI	GATC	2 cut(s)	31, 88
BstMBI	GATC	2 cut(s)	28, 85
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	2 cut(s)	16, 185
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	62, 80, 287
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	37, 243
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	66, 73, 139
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	56, 295
CviAII	CATG	2 cut(s)	13, 182
CviQI	GTAC	2 cut(s)	56, 295
DdeI	CTNAG	2 cut(s)	82, 168
DpnI	GATC	2 cut(s)	30, 87
DpnII	GATC	2 cut(s)	28, 85
DraI	TTTAAA	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	14
FaeI	CATG	2 cut(s)	16, 185
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	2 cut(s)	12, 181
FauNDI	CATATG	2 cut(s)	8, 194
Fnu4HI	GCNGC	3 cut(s)	69, 76, 276
Fsp4HI	GCNGC	3 cut(s)	69, 76, 276
GluI	GCNGC	3 cut(s)	69, 76, 276
HaeIII	GGCC	2 cut(s)	37, 243
HapII	CCGG	2 cut(s)	95, 101
Hin1II	CATG	2 cut(s)	16, 185
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	130, 208
HpaII	CCGG	2 cut(s)	95, 101
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	85, 364
Hpy188III	TCNNGA	2 cut(s)	108, 266
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	2 cut(s)	27, 233
HpyCH4III	ACNGT	2 cut(s)	121, 221
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	12, 18, 68, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	82, 168
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	16, 185
Kzo9I	GATC	2 cut(s)	28, 85
LpnPI	CCDG	8 cut(s)	51, 93, 108, 114, 151, 228, 279, 359
Lsp1109I	GCAGC	3 cut(s)	62, 80, 287
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	30, 87
MboI	GATC	2 cut(s)	28, 85
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	4 cut(s)	24, 313, 335, 383
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	5 cut(s)	43, 89, 265, 325, 370
Mph1103I	ATGCAT	1 cut(s)	14
MseI	TTAA	2 cut(s)	114, 388
MslI	CAYNNNNRTG	2 cut(s)	11, 186
MspI	CCGG	2 cut(s)	95, 101
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	102
NdeI	CATATG	2 cut(s)	8, 194
NdeII	GATC	2 cut(s)	28, 85
NlaIII	CATG	2 cut(s)	16, 185
NlaIV	GGNNCC	2 cut(s)	99, 379
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	2 cut(s)	16, 185
NspV	TTCGAA	1 cut(s)	300
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	70, 77, 277
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	99, 379
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	2 cut(s)	57, 296
RsaNI	GTAC	2 cut(s)	56, 295
RseI	CAYNNNNRTG	2 cut(s)	11, 186
SaqAI	TTAA	2 cut(s)	114, 388
SatI	GCNGC	3 cut(s)	69, 76, 276
Sau3AI	GATC	2 cut(s)	28, 85
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	5 cut(s)	54, 73, 280, 309, 353
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	11, 186
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	24, 313, 335, 383
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	121, 221
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	31, 300
TasI	AATT	4 cut(s)	24, 313, 335, 383
TatI	WGTACW	2 cut(s)	55, 294
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	114, 388
Tru9I	TTAA	2 cut(s)	114, 388
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	3 cut(s)	68, 75, 275
TspRI	CASTG	1 cut(s)	226
XapI	RAATTY	2 cut(s)	313, 383
XceI	RCATGY	2 cut(s)	16, 185
ZrmI	AGTACT	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.