Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

34854743 .. 34855885

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTTGACCTCAGAGCTGATGCAATGAAAGGATTTTTTGGGGAACCCTTTCTGCGAAAAAATTCTGAACCATTCATGAGTTCTTTTACAAGGACCTTATCATGGAGTGAAAGGTCGCAAGATAGTTTCTCCAGTGAAGATCCCAATGAAGCAAATTCTTCTCATTCCTTACACATGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTATTGTGGAATCTATGCTGAGTAAAGTAATGGAGGAGTTTCAGCATCGGCTAGCAAGCCAAACTGAACTGGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGAGTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

4.84

Isoelectric Point (pI)

74.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	3 cut(s)	61, 154, 216
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	102, 362
AhdI	GACNNNNNGTC	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	319, 355
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	61, 154, 216
Asp700I	GAANNNNTTC	3 cut(s)	48, 61, 216
AspS9I	GGNCC	2 cut(s)	93, 323
AsuHPI	GGTGA	1 cut(s)	377
AsuNHI	GCTAGC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	93
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	321, 357
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	179, 275
Bme1390I	CCNGG	2 cut(s)	321, 357
Bme18I	GGWCC	1 cut(s)	93
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	93, 323
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	321, 357
BmsI	GCATC	2 cut(s)	10, 277
BmtI	GCTAGC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 362
Bse1I	ACTGG	2 cut(s)	132, 297
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	321, 357
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	102, 362
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	3 cut(s)	25, 233, 324
BseNI	ACTGG	2 cut(s)	132, 297
BseRI	GAGGAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	102, 362
BsmAI	GTCTC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	3 cut(s)	24, 234, 325
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	132, 297
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	321, 357
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	276, 280
BstDEI	CTNAG	3 cut(s)	11, 242, 333
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	321, 357
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	319, 355
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	276, 280
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	93, 323
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	3 cut(s)	76, 102, 175
CviJI	RGCY	5 cut(s)	17, 274, 282, 318, 324
CviKI_1	RGCY	5 cut(s)	17, 274, 282, 318, 324
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	3 cut(s)	11, 242, 333
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	319, 355
EcoRV	GATATC	1 cut(s)	370
FaeI	CATG	3 cut(s)	79, 105, 178
FaiI	YATR	4 cut(s)	77, 103, 176, 239
FatI	CATG	3 cut(s)	75, 101, 174
FspBI	CTAG	2 cut(s)	179, 275
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	79, 105, 178
HinfI	GANTC	3 cut(s)	233, 329, 335
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	4 cut(s)	14, 67, 334, 352
Hpy188III	TCNNGA	2 cut(s)	76, 373
HpyAV	CCTTC	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	11, 242, 333
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	79, 105, 178
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	145, 194, 278, 306, 333, 339, 342, 348, 369
LweI	GCATC	2 cut(s)	10, 277
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	2 cut(s)	179, 275
MaeII	ACGT	1 cut(s)	184
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	149, 150, 224
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	3 cut(s)	61, 154, 216
MlyI	GAGTC	2 cut(s)	323, 344
MnlI	CCTC	2 cut(s)	20, 250
MroXI	GAANNNNTTC	3 cut(s)	48, 61, 216
MspR9I	CCNGG	2 cut(s)	321, 357
MvaI	CCWGG	2 cut(s)	321, 357
NdeII	GATC	1 cut(s)	139
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	3 cut(s)	79, 105, 178
NlaIV	GGNNCC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	75
PdmI	GAANNNNTTC	3 cut(s)	48, 61, 216
PfeI	GAWTC	1 cut(s)	233
PleI	GAGTC	2 cut(s)	323, 343
PpsI	GAGTC	2 cut(s)	323, 343
Ppu21I	YACGTR	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	319, 355
PspGI	CCWGG	2 cut(s)	319, 355
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	93, 323
PspPPI	RGGWCCY	1 cut(s)	93
PsrI	GAACNNNNNNTAC	2 cut(s)	174, 206
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	93, 323
SchI	GAGTC	2 cut(s)	323, 344
ScrFI	CCNGG	2 cut(s)	321, 357
SetI	ASST	7 cut(s)	12, 19, 98, 116, 187, 307, 358
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	10, 277
SinI	GGWCC	1 cut(s)	93
Sse9I	AATT	3 cut(s)	61, 154, 216
SspMI	CTAG	2 cut(s)	179, 275
StyD4I	CCNGG	2 cut(s)	319, 355
TaiI	ACGT	1 cut(s)	187
TasI	AATT	3 cut(s)	61, 154, 216
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	41, 64, 162
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	61, 154, 216
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	3 cut(s)	48, 61, 216
XspI	CTAG	2 cut(s)	179, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.