Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

48667512 .. 48672745

Gene Structure 5234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAAGATGAGCTCAACCTGACTGAGGGGATTGTAGAGCTGAATGAAGATAACAATGAGCTTTTGCTTTGGGGGATTAGTTCCCCTTTCAGTGCACTCTGGGTTGTTGAAGGCCCTTGTGACTCTGTGCCTATTCCTGACGGGGCAGCTCTATCAGCATTTCAGTACTTCGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

81

Amino Acids

8.93

Weight (kDa)

4.05

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	110, 227
AluBI	AGCT	4 cut(s)	13, 40, 61, 149
AluI	AGCT	4 cut(s)	13, 40, 61, 149
Alw21I	GWGCWC	2 cut(s)	15, 97
Alw44I	GTGCAC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	15, 97
BbvI	GCAGC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	15, 97
BslI	CCNNNNNNNGG	1 cut(s)	25
BsnI	GGCC	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	15, 97
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	171
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	166
CviJI	RGCY	8 cut(s)	13, 40, 61, 114, 149, 197, 214, 230
CviKI_1	RGCY	8 cut(s)	13, 40, 61, 114, 149, 197, 214, 230
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	182, 235
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	177
LpnPI	CCDG	3 cut(s)	32, 85, 150
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	119
MboII	GAAGA	2 cut(s)	17, 59
MhlI	GDGCHC	2 cut(s)	15, 97
MluCI	AATT	2 cut(s)	184, 206
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	19, 196, 241
MwoI	GCNNNNNNNGC	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	113
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	15, 97
SetI	ASST	7 cut(s)	15, 21, 42, 63, 151, 180, 224
SfuI	TTCGAA	1 cut(s)	171
SgeI	CNNG	6 cut(s)	31, 112, 129, 149, 154, 203
Sse9I	AATT	2 cut(s)	184, 206
SstI	GAGCTC	1 cut(s)	15
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	184, 206
TatI	WGTACW	1 cut(s)	165
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.