Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012002.1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 948

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012002.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

attgtggaatctatgctgagtaaagaaatggaggagtttcagcatcggctagcaagccaaactgaactggtaaaagaaccttccaaagatagccctggccctgactctgagtctccatctctttctgaacctggttctggtgatatcaagaatgaagagaaagctgcgactcaaatgaagaaggatgattgttgcaatcaaacatatgaccatcaagagggatcaaaaggtcagtttgtgaagcataaactgttggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

86

Amino Acids

9.58

Weight (kDa)

4.96

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	137, 217
AhdI	GACNNNNNGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	94, 130
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	124, 219
BciT130I	CCWGG	2 cut(s)	96, 132
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	96, 132
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	96, 132
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 217
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	96, 132
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	137, 217
BseMII	CTCAG	2 cut(s)	8, 99
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	137, 217
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	9, 100
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	96, 132
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	51, 55
BstDEI	CTNAG	2 cut(s)	17, 108
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	221
BstNI	CCWGG	2 cut(s)	96, 132
BstSCI	CCNGG	2 cut(s)	94, 130
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	51, 55
Cfr13I	GGNCC	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	130
CviJI	RGCY	5 cut(s)	49, 57, 93, 99, 164
CviKI_1	RGCY	5 cut(s)	49, 57, 93, 99, 164
DdeI	CTNAG	2 cut(s)	17, 108
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	94, 130
EcoRV	GATATC	1 cut(s)	145
FaiI	YATR	4 cut(s)	14, 205, 207, 246
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	99
HinfI	GANTC	4 cut(s)	8, 104, 110, 169
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	109, 127
Hpy188III	TCNNGA	2 cut(s)	148, 215
HpyAV	CCTTC	2 cut(s)	90, 175
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	17, 108
Kzo9I	GATC	1 cut(s)	221
LpnPI	CCDG	7 cut(s)	53, 81, 108, 114, 117, 123, 144
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	52
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	1 cut(s)	50
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	2 cut(s)	167, 190
MlyI	GAGTC	3 cut(s)	98, 119, 163
MnlI	CCTC	2 cut(s)	25, 211
MspR9I	CCNGG	2 cut(s)	96, 132
MvaI	CCWGG	2 cut(s)	96, 132
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	1 cut(s)	221
NheI	GCTAGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	98, 118, 163
PpsI	GAGTC	3 cut(s)	98, 118, 163
Psp6I	CCWGG	2 cut(s)	94, 130
PspGI	CCWGG	2 cut(s)	94, 130
PspPI	GGNCC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	3 cut(s)	98, 119, 163
ScrFI	CCNGG	2 cut(s)	96, 132
SetI	ASST	4 cut(s)	82, 133, 166, 232
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	94, 130
TaaI	ACNGT	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	168, 191
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.