Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

55850817 .. 55853073

Gene Structure 2257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG324900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTTGACCTCAGAGCTGATGCAATGAAAGGATTTTTTGGGGAACCCTTTCTGCGAAAAAATTCTGAACCATTCATGAGTTCTTTTACAAGGACCTTATCATGGAGTGAAAGGTCGCAAGATAGTTTCTCCAGTGAAGATCCCAATGAAGCAAATTCTTCTCATTCCTTACACATGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTATTGTGGAATCTATGCTGAGTAAAGTAATGGAGGAGTTTCAGCATCGGCTAGCAAGCCAAACTGAACTGGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGAGTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGAATGAAGAGAAAGCTGCGACTCAAATAAAGAAGGATGATTGTTGCAATAAAACATATGACCATCAAGAGGGATCAAAAGGCCAGTTTGTGAGACATAAAATGTTGGTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGAAAATCGCAAGTTATACAATCTGGTGCAAGATCTGAAAGGAAATATAAGGGTGTACTGCCGAGTGCGTCCTCTGTTGCCTGGGCAAACAAATCGTTTCAATACTTTTGATCAAATAGATGATGGAAAAATTACAATTGTCACCCCTTCAAAATATGGCAAAGAGGGGCGGAAATCTTTCAGTTTCAACAAAGTATTTGGGCCATTATCAACCCAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

288

Amino Acids

32.84

Weight (kDa)

7.72

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	215 - 287	1.8e-12	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	606
AciI	CCGC	1 cut(s)	814
AclWI	GGATC	2 cut(s)	134, 454
AcsI	RAATTY	3 cut(s)	61, 154, 216
AfaI	GTAC	3 cut(s)	183, 566, 701
AfiI	CCNNNNNNNGG	3 cut(s)	102, 362, 442
AgsI	TTSAA	7 cut(s)	485, 514, 580, 644, 745, 795, 832
AhdI	GACNNNNNGTC	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	319, 355, 567, 724
AluBI	AGCT	2 cut(s)	17, 389
AluI	AGCT	2 cut(s)	17, 389
Alw26I	GTCTC	2 cut(s)	342, 460
AlwI	GGATC	2 cut(s)	134, 454
AoxI	GGCC	3 cut(s)	322, 454, 845
ApeKI	GCWGC	2 cut(s)	389, 617
ApoI	RAATTY	3 cut(s)	61, 154, 216
Asp700I	GAANNNNTTC	4 cut(s)	48, 61, 216, 821
AspA2I	CCTAGG	1 cut(s)	586
AspS9I	GGNCC	3 cut(s)	93, 323, 845
AsuHPI	GGTGA	2 cut(s)	377, 778
AsuNHI	GCTAGC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	93
AvrII	CCTAGG	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	376, 629
BccI	CCATC	3 cut(s)	349, 444, 761
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	4 cut(s)	321, 357, 569, 726
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	342, 460
BfaI	CTAG	3 cut(s)	179, 275, 587
BfuAI	ACCTGC	1 cut(s)	606
BfuI	GTATCC	1 cut(s)	620
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	2 cut(s)	390, 618
BlnI	CCTAGG	1 cut(s)	586
BlsI	GCNGC	2 cut(s)	391, 619
Bme1390I	CCNGG	4 cut(s)	321, 357, 569, 726
Bme18I	GGWCC	1 cut(s)	93
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	3 cut(s)	93, 323, 845
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	4 cut(s)	321, 357, 569, 726
BmsI	GCATC	3 cut(s)	10, 277, 629
BmtI	GCTAGC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	319, 586, 725, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 362, 442
Bse1I	ACTGG	3 cut(s)	132, 297, 457
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	4 cut(s)	321, 357, 569, 726
BseDI	CCNNGG	4 cut(s)	319, 586, 725, 859
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	102, 362, 442
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	3 cut(s)	25, 233, 324
BseNI	ACTGG	3 cut(s)	132, 297, 457
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	376, 629
BshFI	GGCC	3 cut(s)	324, 456, 847
BslI	CCNNNNNNNGG	3 cut(s)	102, 362, 442
BsmAI	GTCTC	2 cut(s)	342, 460
BsnI	GGCC	3 cut(s)	324, 456, 847
Bsp143I	GATC	4 cut(s)	139, 446, 676, 754
BspACI	CCGC	1 cut(s)	814
BspANI	GGCC	3 cut(s)	324, 456, 847
BspCNI	CTCAG	3 cut(s)	24, 234, 325
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	606
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	134, 454
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	3 cut(s)	132, 297, 457
BssECI	CCNNGG	4 cut(s)	319, 586, 725, 859
BssMI	GATC	4 cut(s)	139, 446, 676, 754
BssT1I	CCWWGG	2 cut(s)	586, 859
Bst2UI	CCWGG	4 cut(s)	321, 357, 569, 726
Bst6I	CTCTTC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	276, 280
BstDEI	CTNAG	3 cut(s)	11, 242, 333
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	4 cut(s)	142, 449, 679, 757
BstMAI	GTCTC	2 cut(s)	342, 460
BstMBI	GATC	4 cut(s)	139, 446, 676, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	4 cut(s)	321, 357, 569, 726
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	4 cut(s)	319, 355, 567, 724
BstV1I	GCAGC	2 cut(s)	376, 629
BstX2I	RGATCY	2 cut(s)	139, 676
BstYI	RGATCY	2 cut(s)	139, 676
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	3 cut(s)	324, 456, 847
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	276, 280
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	93, 323, 845
CseI	GACGC	1 cut(s)	701
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	182, 565, 700
CviAII	CATG	5 cut(s)	76, 102, 175, 602, 614
CviQI	GTAC	3 cut(s)	182, 565, 700
DdeI	CTNAG	3 cut(s)	11, 242, 333
DpnI	GATC	4 cut(s)	141, 448, 678, 756
DpnII	GATC	4 cut(s)	139, 446, 676, 754
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	375
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	586, 859
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	4 cut(s)	319, 355, 567, 724
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	586, 859
ErhI	CCWWGG	2 cut(s)	586, 859
FaeI	CATG	5 cut(s)	79, 105, 178, 605, 617
FatI	CATG	5 cut(s)	75, 101, 174, 601, 613
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	2 cut(s)	390, 618
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	390, 618
FspBI	CTAG	3 cut(s)	179, 275, 587
GluI	GCNGC	2 cut(s)	390, 618
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	324, 456, 847
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	5 cut(s)	79, 105, 178, 605, 617
HinfI	GANTC	4 cut(s)	233, 329, 335, 394
HphI	GGTGA	2 cut(s)	377, 778
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	5 cut(s)	14, 67, 334, 352, 681
Hpy188III	TCNNGA	6 cut(s)	76, 373, 440, 506, 624, 641
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	3 cut(s)	315, 400, 801
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	6 cut(s)	23, 420, 595, 601, 617, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	3 cut(s)	11, 242, 333
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	79, 105, 178, 605, 617
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	4 cut(s)	139, 446, 676, 754
Lsp1109I	GCAGC	2 cut(s)	376, 629
LweI	GCATC	3 cut(s)	10, 277, 629
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	3 cut(s)	179, 275, 587
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	4 cut(s)	141, 448, 678, 756
MboI	GATC	4 cut(s)	139, 446, 676, 754
MboII	GAAGA	5 cut(s)	149, 150, 224, 392, 656
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	2 cut(s)	139, 676
MluCI	AATT	6 cut(s)	61, 154, 216, 509, 774, 780
MlyI	GAGTC	3 cut(s)	323, 344, 388
MnlI	CCTC	6 cut(s)	20, 250, 436, 565, 726, 802
MroXI	GAANNNNTTC	4 cut(s)	48, 61, 216, 821
MslI	CAYNNNNRTG	1 cut(s)	600
MspR9I	CCNGG	4 cut(s)	321, 357, 569, 726
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	4 cut(s)	321, 357, 569, 726
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	4 cut(s)	139, 446, 676, 754
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	5 cut(s)	79, 105, 178, 605, 617
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	1 cut(s)	784
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	75
PaqCI	CACCTGC	1 cut(s)	606
PdmI	GAANNNNTTC	4 cut(s)	48, 61, 216, 821
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	391, 619
PleI	GAGTC	3 cut(s)	323, 343, 388
PpsI	GAGTC	3 cut(s)	323, 343, 388
Ppu21I	YACGTR	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	319, 355, 567, 724
PspGI	CCWGG	4 cut(s)	319, 355, 567, 724
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	93, 323, 845
PspPPI	RGGWCCY	1 cut(s)	93
PsrI	GAACNNNNNNTAC	2 cut(s)	174, 206
PsuI	RGATCY	2 cut(s)	139, 676
RsaI	GTAC	3 cut(s)	183, 566, 701
RsaNI	GTAC	3 cut(s)	182, 565, 700
RseI	CAYNNNNRTG	1 cut(s)	600
SatI	GCNGC	2 cut(s)	390, 618
Sau3AI	GATC	4 cut(s)	139, 446, 676, 754
Sau96I	GGNCC	3 cut(s)	93, 323, 845
SchI	GAGTC	3 cut(s)	323, 344, 388
ScrFI	CCNGG	4 cut(s)	321, 357, 569, 726
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	3 cut(s)	10, 277, 629
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	6 cut(s)	61, 154, 216, 509, 774, 780
SsiI	CCGC	1 cut(s)	814
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	3 cut(s)	179, 275, 587
StyD4I	CCNGG	4 cut(s)	319, 355, 567, 724
StyI	CCWWGG	2 cut(s)	586, 859
TaiI	ACGT	1 cut(s)	187
TasI	AATT	6 cut(s)	61, 154, 216, 509, 774, 780
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	2 cut(s)	389, 617
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	6 cut(s)	41, 64, 162, 393, 560, 575
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	61, 154, 216
XceI	RCATGY	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	586
XmnI	GAANNNNTTC	4 cut(s)	48, 61, 216, 821
XspI	CTAG	3 cut(s)	179, 275, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.