Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

6038489 .. 6040293

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGATAAACAGTTGCTTGACAGTTCATGTTCACGGAAGGGATCTGGCATCTGGAAGTATTCTTCGTGGTTGTATGCATCTAGTTGACTTAGCAGGAAGCGAAAGAGTTGATAAATCCGAGGTGACTGGTGATAGATTAAAGGAGGCACAACATATTAACAAATCTCTCTCAGCTTTAGGAGATGTCATTGCCTCTCTTGCTCAAAAGAATTCACACGTTCCGTATAGAAATAGTAAACTCACACAACTACTCCAAGACTCACTTGGAGGGCAAGCAAAGACACTCATGTTTGTTCACATTAGTCCTGAGTATGAAGCTCTTGGAGAAACATTGAGTACCCTCAAGTTTGCAGAACGGGTTTCCACAGTTGAACTTGGTGCTGCTCGAGTCAACAAAGATGGTGCAAATGTTAAAGAGCTGAAAGAACAGATTGCTACTCTGAAGGCAGCCCTAGCACGAAAAGAAGGTGAGGGAATGCAGTTGAAAAATTCGCTCTCCCTAAGCCCTGAAAGATTTAGAATGAATTCTGCTGGCTCTTCGCCTATGCATCCAAGAGGAAAAAGTACTGGAGATTTTTCCGGTGGTCGTAAGCAACCGACGGAGGATTTTGGAAATATAGAGGCTCGTAAAACCTCTACATCAAAGCCAAAAAGGCGAAGTTTGGATCTTCAAGACATGTTGATGCATTCACCTTCATGGCCACCGGTTGGTAGTCCCAAAGTGAATGGAAAAGAGGATGATAAGGAGTTATTTTCATCAATTCCCGGTGATTGGGTTGATAAGGTGATGGTGAACAAGCTTGAGAGTAAAAGTAGAGAACAAAGTCCATTAAGATCATGTTGGGATCATGTGGACAACAGACAGCTACCAGAGATGTTTGGTCAGAGTCGCCTCTCACACCCTTCCATCATATGTTCGACGACAAATAAGGAGGAGAGTCAAGACTTTGACGAATCTGATGATCAACTTGATGCTGCAACTAGTGATTCTTCAGAGCCAGACACGCTTTGGCAACTGAATGCTCCTATTAAAGCTACAAACATTCCAAATGGGTTGGGGGCAAAACCGAAGAAAACCAACTGCAGGCCGGTAAGGAGCCCAGAAACTAGAAGTTTCATTCCATCACTAATTCCTTCACCGTCGCGAAAACCACCCAATGGTGTTAGTCAAGCTTTGCCTAAGAGGCATTCAGTTTCTGCTGAAGGCAAGCGAAGGTATGGGAGTGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

410

Amino Acids

44.91

Weight (kDa)

9.2

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	5 - 122	1.2e-44	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	707, 1157
AccII	CGCG	1 cut(s)	1144
AclWI	GGATC	3 cut(s)	48, 672, 852
AcoI	YGGCCR	1 cut(s)	698
AcsI	RAATTY	3 cut(s)	208, 487, 523
AcuI	CTGAAG	3 cut(s)	461, 975, 1221
AfaI	GTAC	2 cut(s)	337, 565
AfiI	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
AflIII	ACRYGT	2 cut(s)	214, 675
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	3 cut(s)	371, 484, 671
AhlI	ACTAGT	1 cut(s)	980
AluBI	AGCT	7 cut(s)	173, 317, 418, 799, 865, 1034, 1172
AluI	AGCT	7 cut(s)	173, 317, 418, 799, 865, 1034, 1172
AlwI	GGATC	3 cut(s)	48, 672, 852
AlwNI	CAGNNNCTG	1 cut(s)	1196
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	698, 1085
ApeKI	GCWGC	3 cut(s)	380, 446, 974
ApoI	RAATTY	3 cut(s)	208, 487, 523
AsiGI	ACCGGT	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	8 cut(s)	133, 140, 479, 681, 779, 796, 802, 1128
AvaI	CYCGRG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	1100
BbvI	GCAGC	3 cut(s)	367, 458, 961
BccI	CCATC	4 cut(s)	392, 781, 914, 1129
BclI	TGATCA	1 cut(s)	961
BcnI	CCSGG	1 cut(s)	765
BcuI	ACTAGT	1 cut(s)	980
BfaI	CTAG	4 cut(s)	80, 452, 981, 1107
BfmI	CTRYAG	1 cut(s)	1081
BglI	GCCNNNNNGGC	2 cut(s)	652, 1183
BisI	GCNGC	3 cut(s)	381, 447, 975
BlsI	GCNGC	3 cut(s)	382, 448, 976
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	765
BmeT110I	CYCGRG	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	1097
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	5 cut(s)	56, 85, 556, 672, 961
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	326, 821
BpuMI	CCSGG	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	2 cut(s)	578, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
Bse118I	RCCGGY	2 cut(s)	703, 1087
Bse1I	ACTGG	2 cut(s)	130, 571
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	547, 742
BseLI	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	183, 297
BseNI	ACTGG	2 cut(s)	130, 571
BseRI	GAGGAG	1 cut(s)	947
BseXI	GCAGC	3 cut(s)	367, 458, 961
Bsh1236I	CGCG	1 cut(s)	1144
BshFI	GGCC	2 cut(s)	700, 1087
BshTI	ACCGGT	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	4 cut(s)	579, 704, 765, 1088
BslFI	GGGAC	1 cut(s)	699
BslI	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
BsmFI	GGGAC	1 cut(s)	699
BsmI	GAATGC	4 cut(s)	480, 685, 1024, 1186
BsnI	GGCC	2 cut(s)	700, 1087
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	1100
Bsp143I	GATC	5 cut(s)	40, 664, 833, 844, 961
Bsp68I	TCGCGA	1 cut(s)	1144
BspANI	GGCC	2 cut(s)	700, 1087
BspCNI	CTCAG	2 cut(s)	182, 298
BspFNI	CGCG	1 cut(s)	1144
BspLI	GGNNCC	1 cut(s)	1097
BspMAI	CTGCAG	1 cut(s)	1085
BspPI	GGATC	3 cut(s)	48, 672, 852
BspQI	GCTCTTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	2 cut(s)	703, 1087
BsrI	ACTGG	2 cut(s)	130, 571
BssAI	RCCGGY	2 cut(s)	703, 1087
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	40, 664, 833, 844, 961
Bst4CI	ACNGT	4 cut(s)	11, 22, 367, 1140
Bst6I	CTCTTC	1 cut(s)	541
BstC8I	GCNNGC	4 cut(s)	273, 532, 1085, 1208
BstDEI	CTNAG	5 cut(s)	88, 169, 306, 500, 1179
BstF5I	GGATG	2 cut(s)	547, 742
BstFNI	CGCG	1 cut(s)	1144
BstKTI	GATC	5 cut(s)	43, 667, 836, 847, 964
BstMBI	GATC	5 cut(s)	40, 664, 833, 844, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 452, 652, 1003, 1183
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	1081
BstUI	CGCG	1 cut(s)	1144
BstV1I	GCAGC	3 cut(s)	367, 458, 961
BstX2I	RGATCY	2 cut(s)	40, 664
BstYI	RGATCY	2 cut(s)	40, 664
BsuRI	GGCC	2 cut(s)	700, 1087
BtsCI	GGATG	2 cut(s)	547, 742
BtuMI	TCGCGA	1 cut(s)	1144
Cac8I	GCNNGC	4 cut(s)	273, 532, 1085, 1208
CaiI	CAGNNNCTG	1 cut(s)	1196
Cfr10I	RCCGGY	2 cut(s)	703, 1087
Csp6I	GTAC	2 cut(s)	336, 564
CspAI	ACCGGT	1 cut(s)	703
CviAII	CATG	6 cut(s)	26, 286, 676, 696, 837, 848
CviQI	GTAC	2 cut(s)	336, 564
DdeI	CTNAG	5 cut(s)	88, 169, 306, 500, 1179
DpnI	GATC	5 cut(s)	42, 666, 835, 846, 963
DpnII	GATC	5 cut(s)	40, 664, 833, 844, 961
EaeI	YGGCCR	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	1100
Eco57I	CTGAAG	3 cut(s)	461, 975, 1221
Eco88I	CYCGRG	1 cut(s)	384
EcoRI	GAATTC	2 cut(s)	208, 523
EcoT22I	ATGCAT	3 cut(s)	78, 549, 687
EcoT38I	GRGCYC	1 cut(s)	1100
FaeI	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	6 cut(s)	25, 285, 675, 695, 836, 847
FauNDI	CATATG	1 cut(s)	911
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	3 cut(s)	381, 447, 975
FokI	GGATG	2 cut(s)	534, 749
FriOI	GRGCYC	1 cut(s)	1100
Fsp4HI	GCNGC	3 cut(s)	381, 447, 975
FspBI	CTAG	4 cut(s)	80, 452, 981, 1107
GluI	GCNGC	3 cut(s)	381, 447, 975
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	700, 1087
HapII	CCGG	4 cut(s)	579, 704, 765, 1088
Hin1II	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
HincII	GTYRAC	2 cut(s)	85, 391
HindII	GTYRAC	2 cut(s)	85, 391
HindIII	AAGCTT	2 cut(s)	797, 1170
HinfI	GANTC	6 cut(s)	257, 387, 886, 937, 953, 986
HpaII	CCGG	4 cut(s)	579, 704, 765, 1088
HphI	GGTGA	8 cut(s)	133, 140, 479, 681, 779, 796, 802, 1128
Hpy166II	GTNNAC	7 cut(s)	31, 85, 236, 295, 391, 793, 853
Hpy188I	TCNGA	5 cut(s)	118, 441, 885, 958, 994
Hpy188III	TCNNGA	5 cut(s)	51, 305, 671, 941, 1143
Hpy8I	GTNNAC	7 cut(s)	31, 85, 236, 295, 391, 793, 853
Hpy99I	CGWCG	3 cut(s)	601, 922, 1144
HpyAV	CCTTC	8 cut(s)	30, 436, 458, 702, 912, 1143, 1196, 1206
HpyCH4III	ACNGT	4 cut(s)	11, 22, 367, 1140
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	9 cut(s)	76, 350, 404, 478, 547, 685, 977, 1083, 1226
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 452, 652, 1003, 1183
HpyF3I	CTNAG	5 cut(s)	88, 169, 306, 500, 1179
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	40, 664, 833, 844, 961
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	2 cut(s)	1027, 1095
Lsp1109I	GCAGC	3 cut(s)	367, 458, 961
LweI	GCATC	5 cut(s)	56, 85, 556, 672, 961
MaeI	CTAG	4 cut(s)	80, 452, 981, 1107
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	5 cut(s)	42, 666, 835, 846, 963
MboI	GATC	5 cut(s)	40, 664, 833, 844, 961
MboII	GAAGA	5 cut(s)	53, 528, 659, 981, 1081
MflI	RGATCY	2 cut(s)	40, 664
MhlI	GDGCHC	1 cut(s)	1100
MlsI	TGGCCA	1 cut(s)	700
MluCI	AATT	5 cut(s)	208, 487, 523, 759, 1128
MluNI	TGGCCA	1 cut(s)	700
MlyI	GAGTC	4 cut(s)	251, 396, 895, 946
Mox20I	TGGCCA	1 cut(s)	700
Mph1103I	ATGCAT	3 cut(s)	78, 549, 687
MroXI	GAANNNNTTC	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	700
MseI	TTAA	5 cut(s)	137, 156, 411, 830, 1029
MslI	CAYNNNNRTG	2 cut(s)	680, 694
Msp20I	TGGCCA	1 cut(s)	700
MspI	CCGG	4 cut(s)	579, 704, 765, 1088
MspR9I	CCNGG	1 cut(s)	765
Mva1269I	GAATGC	4 cut(s)	480, 685, 1024, 1186
MvnI	CGCG	1 cut(s)	1144
MwoI	GCNNNNNNNGC	5 cut(s)	197, 452, 652, 1003, 1183
NciI	CCSGG	1 cut(s)	765
NdeI	CATATG	1 cut(s)	911
NdeII	GATC	5 cut(s)	40, 664, 833, 844, 961
NlaIII	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
NlaIV	GGNNCC	1 cut(s)	1097
NmuCI	GTSAC	1 cut(s)	121
NruI	TCGCGA	1 cut(s)	1144
NsiI	ATGCAT	3 cut(s)	78, 549, 687
NspI	RCATGY	1 cut(s)	679
PaeR7I	CTCGAG	1 cut(s)	384
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	541
PctI	GAATGC	4 cut(s)	480, 685, 1024, 1186
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	2 cut(s)	953, 986
PflMI	CCANNNNNTGG	2 cut(s)	707, 1157
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	382, 448, 976
PleI	GAGTC	4 cut(s)	251, 395, 894, 945
PpsI	GAGTC	4 cut(s)	251, 395, 894, 945
PscI	ACATGT	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	1097
PspXI	VCTCGAGB	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	1085
PstNI	CAGNNNCTG	1 cut(s)	1196
PsuI	RGATCY	2 cut(s)	40, 664
RruI	TCGCGA	1 cut(s)	1144
RsaI	GTAC	2 cut(s)	337, 565
RsaNI	GTAC	2 cut(s)	336, 564
RseI	CAYNNNNRTG	2 cut(s)	680, 694
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	5 cut(s)	137, 156, 411, 830, 1029
SatI	GCNGC	3 cut(s)	381, 447, 975
Sau3AI	GATC	5 cut(s)	40, 664, 833, 844, 961
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	4 cut(s)	251, 396, 895, 946
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	1100
SfaNI	GCATC	5 cut(s)	56, 85, 556, 672, 961
SfcI	CTRYAG	1 cut(s)	1081
Sfr274I	CTCGAG	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	680, 694
SmlI	CTYRAG	3 cut(s)	341, 384, 800
SmoI	CTYRAG	3 cut(s)	341, 384, 800
SpeI	ACTAGT	1 cut(s)	980
Sse9I	AATT	5 cut(s)	208, 487, 523, 759, 1128
SspMI	CTAG	4 cut(s)	80, 452, 981, 1107
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	4 cut(s)	11, 22, 367, 1140
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	385, 917
TasI	AATT	5 cut(s)	208, 487, 523, 759, 1128
TatI	WGTACW	1 cut(s)	563
TfiI	GAWTC	2 cut(s)	953, 986
Tru1I	TTAA	5 cut(s)	137, 156, 411, 830, 1029
Tru9I	TTAA	5 cut(s)	137, 156, 411, 830, 1029
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	380, 446, 974
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	6 cut(s)	14, 327, 536, 684, 744, 1105
TspGWI	ACGGA	3 cut(s)	48, 210, 614
Van91I	CCANNNNNTGG	2 cut(s)	707, 1157
XapI	RAATTY	3 cut(s)	208, 487, 523
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	260, 1005
XhoI	CTCGAG	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	4 cut(s)	80, 452, 981, 1107
ZrmI	AGTACT	1 cut(s)	565
Zsp2I	ATGCAT	3 cut(s)	78, 549, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.