Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

48097030 .. 48100319

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGCAACAAGCTTTGTCCTCACGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGTCCAGTACAAGGCCATTAAATTGGACCAAGAGAGTCAGTACCCACTCTTCTCCTTTCAAATTCTGTCTGTCTATATGCTTCAAACTAAGTTGACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTGACTCTGTGCCTATTCCTAATGGGGCAGCTCTATCAGCATTTCAGTACTTTGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGATGGTTTCAACAATGAAGAAGTCGATCTTTGATGAACAAACTAACAAGGCCTTAAGGAAATTGCAAAAGAATGCTCAAAAGAAGAGAAGGCATCATGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

179

Amino Acids

20.39

Weight (kDa)

9.26

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	165, 337
AcuI	CTGAAG	1 cut(s)	37
AcvI	CACGTG	1 cut(s)	76
AfaI	GTAC	3 cut(s)	113, 146, 320
AfiI	CCNNNNNNNGG	2 cut(s)	115, 245
AflII	CTTAAG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	6 cut(s)	164, 188, 263, 326, 380, 408
AluBI	AGCT	5 cut(s)	25, 64, 85, 302, 509
AluI	AGCT	5 cut(s)	25, 64, 85, 302, 509
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	3 cut(s)	117, 265, 447
ApeKI	GCWGC	2 cut(s)	82, 299
ApoI	RAATTY	2 cut(s)	165, 337
AspS9I	GGNCC	2 cut(s)	130, 266
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BbrPI	CACGTG	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	94, 311
BccI	CCATC	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	34
BfrI	CTTAAG	1 cut(s)	451
BisI	GCNGC	2 cut(s)	83, 300
BlsI	GCNGC	2 cut(s)	84, 301
BmcAI	AGTACT	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	130, 266
BmsI	GCATC	1 cut(s)	499
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BsaAI	YACGTR	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 245
Bse1I	ACTGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	115, 245
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	94, 311
BshFI	GGCC	3 cut(s)	119, 267, 449
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	115, 245
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	119, 267, 449
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	423
BspANI	GGCC	3 cut(s)	119, 267, 449
BspHI	TCATGA	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	245, 534
Bst6I	CTCTTC	3 cut(s)	92, 158, 476
BstAFI	CTTAAG	1 cut(s)	451
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 515
BstNSI	RCATGY	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	94, 311
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	119, 267, 449
BtsIMutI	CAGTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	130, 266
Csp6I	GTAC	3 cut(s)	112, 145, 319
CviAII	CATG	3 cut(s)	206, 494, 524
CviQI	GTAC	3 cut(s)	112, 145, 319
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Eam1104I	CTCTTC	3 cut(s)	92, 158, 476
EarI	CTCTTC	3 cut(s)	92, 158, 476
Ecl136II	GAGCTC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	37
Eco72I	CACGTG	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	209, 497, 527
FaiI	YATR	8 cut(s)	180, 182, 207, 218, 220, 495, 525, 530
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 410, 442
FatI	CATG	3 cut(s)	205, 493, 523
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	83, 300
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	83, 300
GluI	GCNGC	2 cut(s)	83, 300
HaeIII	GGCC	3 cut(s)	119, 267, 449
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	3 cut(s)	209, 497, 527
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	105, 139, 232, 275
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	335, 388
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	13, 257, 480
HpyCH4III	ACNGT	2 cut(s)	245, 534
HpyCH4IV	ACGT	2 cut(s)	75, 330
HpyCH4V	TGCA	2 cut(s)	222, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 515
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	75, 330
Hsp92II	CATG	3 cut(s)	209, 497, 527
Kzo9I	GATC	1 cut(s)	423
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	54, 122, 252
Lsp1109I	GCAGC	2 cut(s)	94, 311
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	2 cut(s)	75, 330
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	5 cut(s)	43, 79, 145, 427, 493
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	6 cut(s)	98, 125, 165, 337, 359, 458
MlyI	GAGTC	3 cut(s)	114, 148, 269
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	3 cut(s)	81, 349, 394
MseI	TTAA	2 cut(s)	123, 452
MslI	CAYNNNNRTG	2 cut(s)	210, 495
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	308, 515
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	3 cut(s)	209, 497, 527
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	449
PciI	ACATGT	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	84, 301
PleI	GAGTC	3 cut(s)	113, 147, 269
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	3 cut(s)	113, 147, 269
Ppu21I	YACGTR	1 cut(s)	76
PscI	ACATGT	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	27
PspCI	CACGTG	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	130, 266
RsaI	GTAC	3 cut(s)	113, 146, 320
RsaNI	GTAC	3 cut(s)	112, 145, 319
RseI	CAYNNNNRTG	2 cut(s)	210, 495
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	123, 452
SatI	GCNGC	2 cut(s)	83, 300
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	2 cut(s)	130, 266
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	3 cut(s)	114, 148, 269
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	18, 27, 66, 78, 87, 304, 333, 377, 511
SfaNI	GCATC	1 cut(s)	499
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	210, 495
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	6 cut(s)	98, 125, 165, 337, 359, 458
SseBI	AGGCCT	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	245, 534
TaiI	ACGT	2 cut(s)	78, 333
TaqI	TCGA	2 cut(s)	422, 505
TasI	AATT	6 cut(s)	98, 125, 165, 337, 359, 458
TatI	WGTACW	2 cut(s)	111, 318
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	123, 452
Tru9I	TTAA	2 cut(s)	123, 452
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	82, 299
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	428, 447
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	2 cut(s)	165, 337
XceI	RCATGY	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.