Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

52527392 .. 52534432

Gene Structure 7041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTTGACCTCAGAGCTGATGCAATGAAAGGATTTTTTGGGGAACCCTTTCTGCGAAAAAATTCTGAACCATTCATGAGTTCTTTTACAAGGACCTTATCATGGAGTGAAAGGTCGCAAGATAGTTTCTCCAGTGAAGATCCCAATGAAGCAAATTCTTCTCATTCCTTACACATGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTATTGTGGAATCTATGCTGAGTAAAGTAATGGAGGAGTTTCAGCATCGGCTAGCAAGCCAAACTGAACTGGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGAGTCTCCATCTCTTTCTGAACCTGGTTCTGAGAAAGCTGCGACTCAAATAAAGAAGGATGATTGTTGCAATAAAACATATGACCATCAAGAGGGATCAAAAGGCCAGTTTGTGAGACATAAAATGTTGGTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAAGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGAAAATCGCAAGTTATACAATCTGGTGCAGGATCTGAAAGGAAATATAAGGGTGTACTGCCGAGTGCGTCCTCTGTTGCCTGGGCAAACAAATCGTTCCAATACTTTTGATCAAATAGATGATGGAAAAATTACAATTGTCACCCCTTCAAAATATGGCAAAGAGGGCGGAAATCTTTCAGTTTCAACAAAGTATTTGGGCCATTATCAACCCAAGGTCATTGAGGATGATAAGCGTTTTCACATACAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCGGTGTCCAAGGGATGGTATCTTCACTAAAAGAACTTTTGGAGCTTGCTCCAATTAAGAAGTCTCCGGTAAACAGCCATCATCATTTTCATAATCGGAGAACCCAGATGGAGGCAGCTTATAGTGAATACAGATCTAGGTGTTTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

353

Amino Acids

40.4

Weight (kDa)

8.64

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	209 - 243	6.5e-08	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	588
Acc36I	ACCTGC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	925
AccI	GTMKAC	1 cut(s)	879
AciI	CCGC	1 cut(s)	795
AclWI	GGATC	3 cut(s)	134, 436, 666
AcsI	RAATTY	3 cut(s)	61, 154, 216
AfaI	GTAC	3 cut(s)	183, 548, 683
AfiI	CCNNNNNNNGG	5 cut(s)	102, 424, 911, 925, 1021
AgsI	TTSAA	6 cut(s)	467, 496, 562, 626, 777, 813
AhdI	GACNNNNNGTC	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	319, 355, 549, 706
AluBI	AGCT	5 cut(s)	17, 371, 910, 955, 1028
AluI	AGCT	5 cut(s)	17, 371, 910, 955, 1028
Alw26I	GTCTC	3 cut(s)	342, 442, 978
AlwI	GGATC	3 cut(s)	134, 436, 666
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	3 cut(s)	322, 436, 826
ApeKI	GCWGC	3 cut(s)	371, 599, 1025
ApoI	RAATTY	3 cut(s)	61, 154, 216
Asp700I	GAANNNNTTC	4 cut(s)	48, 61, 216, 802
AspA2I	CCTAGG	1 cut(s)	568
AspS9I	GGNCC	3 cut(s)	93, 323, 826
AsuHPI	GGTGA	1 cut(s)	760
AsuNHI	GCTAGC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	93
AvrII	CCTAGG	1 cut(s)	568
BbvI	GCAGC	3 cut(s)	358, 611, 1037
BccI	CCATC	6 cut(s)	349, 426, 743, 919, 996, 1012
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	4 cut(s)	321, 357, 551, 708
BciVI	GTATCC	1 cut(s)	602
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	342, 442, 978
BfaI	CTAG	4 cut(s)	179, 275, 569, 1047
BfuAI	ACCTGC	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	1043
BisI	GCNGC	3 cut(s)	372, 600, 1026
BlnI	CCTAGG	1 cut(s)	568
BlsI	GCNGC	3 cut(s)	373, 601, 1027
Bme1390I	CCNGG	4 cut(s)	321, 357, 551, 708
Bme18I	GGWCC	1 cut(s)	93
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	3 cut(s)	93, 323, 826
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	4 cut(s)	321, 357, 551, 708
BmsI	GCATC	3 cut(s)	10, 277, 611
BmtI	GCTAGC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	319, 568, 707, 840, 919
BsaWI	WCCGGW	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 424, 911, 925, 1021
Bse1I	ACTGG	3 cut(s)	132, 297, 439
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	4 cut(s)	321, 357, 551, 708
BseDI	CCNNGG	5 cut(s)	319, 568, 707, 840, 919
BseGI	GGATG	3 cut(s)	397, 859, 930
BseLI	CCNNNNNNNGG	5 cut(s)	102, 424, 911, 925, 1021
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	4 cut(s)	25, 233, 324, 354
BseNI	ACTGG	3 cut(s)	132, 297, 439
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	358, 611, 1037
BsgI	GTGCAG	1 cut(s)	674
BshFI	GGCC	3 cut(s)	324, 438, 828
BsiSI	CCGG	1 cut(s)	977
BslI	CCNNNNNNNGG	5 cut(s)	102, 424, 911, 925, 1021
BsmAI	GTCTC	3 cut(s)	342, 442, 978
BsnI	GGCC	3 cut(s)	324, 438, 828
Bsp143I	GATC	5 cut(s)	139, 428, 658, 736, 1043
BspACI	CCGC	1 cut(s)	795
BspANI	GGCC	3 cut(s)	324, 438, 828
BspCNI	CTCAG	4 cut(s)	24, 234, 325, 355
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	588
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	3 cut(s)	134, 436, 666
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	3 cut(s)	132, 297, 439
BssECI	CCNNGG	5 cut(s)	319, 568, 707, 840, 919
BssMI	GATC	5 cut(s)	139, 428, 658, 736, 1043
BssT1I	CCWWGG	3 cut(s)	568, 840, 919
Bst2UI	CCWGG	4 cut(s)	321, 357, 551, 708
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	276, 280, 957
BstDEI	CTNAG	4 cut(s)	11, 242, 333, 363
BstF5I	GGATG	3 cut(s)	397, 859, 930
BstKTI	GATC	5 cut(s)	142, 431, 661, 739, 1046
BstMAI	GTCTC	3 cut(s)	342, 442, 978
BstMBI	GATC	5 cut(s)	139, 428, 658, 736, 1043
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 792
BstNI	CCWGG	4 cut(s)	321, 357, 551, 708
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	4 cut(s)	319, 355, 549, 706
BstV1I	GCAGC	3 cut(s)	358, 611, 1037
BstX2I	RGATCY	3 cut(s)	139, 658, 1043
BstYI	RGATCY	3 cut(s)	139, 658, 1043
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	3 cut(s)	324, 438, 828
BtsCI	GGATG	3 cut(s)	397, 859, 930
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	276, 280, 957
CaiI	CAGNNNCTG	1 cut(s)	661
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	93, 323, 826
CseI	GACGC	1 cut(s)	683
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	182, 547, 682
CviAII	CATG	5 cut(s)	76, 102, 175, 584, 596
CviQI	GTAC	3 cut(s)	182, 547, 682
DdeI	CTNAG	4 cut(s)	11, 242, 333, 363
DpnI	GATC	5 cut(s)	141, 430, 660, 738, 1045
DpnII	GATC	5 cut(s)	139, 428, 658, 736, 1043
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EciI	GGCGGA	1 cut(s)	810
Eco130I	CCWWGG	3 cut(s)	568, 840, 919
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	4 cut(s)	319, 355, 549, 706
EcoT14I	CCWWGG	3 cut(s)	568, 840, 919
ErhI	CCWWGG	3 cut(s)	568, 840, 919
FaeI	CATG	5 cut(s)	79, 105, 178, 587, 599
FatI	CATG	5 cut(s)	75, 101, 174, 583, 595
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	3 cut(s)	372, 600, 1026
FokI	GGATG	3 cut(s)	404, 866, 937
Fsp4HI	GCNGC	3 cut(s)	372, 600, 1026
FspBI	CTAG	4 cut(s)	179, 275, 569, 1047
GluI	GCNGC	3 cut(s)	372, 600, 1026
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	324, 438, 828
HapII	CCGG	1 cut(s)	977
HgaI	GACGC	1 cut(s)	683
Hin1II	CATG	5 cut(s)	79, 105, 178, 587, 599
HinfI	GANTC	4 cut(s)	233, 329, 335, 376
HpaII	CCGG	1 cut(s)	977
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	3 cut(s)	682, 880, 982
Hpy188I	TCNGA	7 cut(s)	14, 67, 334, 352, 364, 663, 1008
Hpy188III	TCNNGA	5 cut(s)	76, 422, 488, 606, 623
Hpy8I	GTNNAC	3 cut(s)	682, 880, 982
HpyAV	CCTTC	3 cut(s)	315, 382, 783
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	6 cut(s)	23, 402, 577, 583, 599, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 792
HpyF3I	CTNAG	4 cut(s)	11, 242, 333, 363
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	79, 105, 178, 587, 599
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	139, 428, 658, 736, 1043
LmnI	GCTCC	2 cut(s)	952, 964
Lsp1109I	GCAGC	3 cut(s)	358, 611, 1037
LweI	GCATC	3 cut(s)	10, 277, 611
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	4 cut(s)	179, 275, 569, 1047
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	5 cut(s)	141, 430, 660, 738, 1045
MboI	GATC	5 cut(s)	139, 428, 658, 736, 1043
MboII	GAAGA	6 cut(s)	149, 150, 224, 566, 638, 924
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	3 cut(s)	139, 658, 1043
MluCI	AATT	7 cut(s)	61, 154, 216, 491, 756, 762, 963
MlyI	GAGTC	3 cut(s)	323, 344, 370
MnlI	CCTC	9 cut(s)	20, 250, 418, 708, 784, 844, 893, 1015, 1050
MroXI	GAANNNNTTC	4 cut(s)	48, 61, 216, 802
MseI	TTAA	1 cut(s)	966
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	977
MspR9I	CCNGG	4 cut(s)	321, 357, 551, 708
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	4 cut(s)	321, 357, 551, 708
MwoI	GCNNNNNNNGC	2 cut(s)	599, 792
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	5 cut(s)	139, 428, 658, 736, 1043
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	5 cut(s)	79, 105, 178, 587, 599
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	713
NmuCI	GTSAC	1 cut(s)	766
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	75
PaqCI	CACCTGC	1 cut(s)	588
PdmI	GAANNNNTTC	4 cut(s)	48, 61, 216, 802
PfeI	GAWTC	1 cut(s)	233
PflMI	CCANNNNNTGG	1 cut(s)	925
PkrI	GCNGC	3 cut(s)	373, 601, 1027
PleI	GAGTC	3 cut(s)	323, 343, 370
PpsI	GAGTC	3 cut(s)	323, 343, 370
Ppu21I	YACGTR	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	4 cut(s)	319, 355, 549, 706
PspGI	CCWGG	4 cut(s)	319, 355, 549, 706
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	93, 323, 826
PspPPI	RGGWCCY	1 cut(s)	93
PsrI	GAACNNNNNNTAC	2 cut(s)	174, 206
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	3 cut(s)	139, 658, 1043
RsaI	GTAC	3 cut(s)	183, 548, 683
RsaNI	GTAC	3 cut(s)	182, 547, 682
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	966
SatI	GCNGC	3 cut(s)	372, 600, 1026
Sau3AI	GATC	5 cut(s)	139, 428, 658, 736, 1043
Sau96I	GGNCC	3 cut(s)	93, 323, 826
SchI	GAGTC	3 cut(s)	323, 344, 370
ScrFI	CCNGG	4 cut(s)	321, 357, 551, 708
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	3 cut(s)	10, 277, 611
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	7 cut(s)	61, 154, 216, 491, 756, 762, 963
SsiI	CCGC	1 cut(s)	795
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	4 cut(s)	179, 275, 569, 1047
StyD4I	CCNGG	4 cut(s)	319, 355, 549, 706
StyI	CCWWGG	3 cut(s)	568, 840, 919
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	885
TasI	AATT	7 cut(s)	61, 154, 216, 491, 756, 762, 963
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	966
Tru9I	TTAA	1 cut(s)	966
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	3 cut(s)	371, 599, 1025
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	6 cut(s)	41, 64, 162, 542, 557, 989
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	925
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	61, 154, 216
XceI	RCATGY	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	4 cut(s)	48, 61, 216, 802
XspI	CTAG	4 cut(s)	179, 275, 569, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.