Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007742.1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

102399 .. 103685

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007742.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgctgagtaaagtaatggaggagtttcagcatcggctagcaagccaaactgaactggtaaaagcaccttccaaagatagccctggccctgactctgagtctccatctctttctgaacctggttctggtgatatcaaggaattgaaacataatctatatgatacaaaagcaggaatgaagtttctacaaatgaagtaccaggaggatttcaacagcctaggtatgcacctgcatggtttggctcatgcagcatcaggataccagaaagttcttgaagaaaatcgcaagttatacaatctggtgcaggatctgaaaggaaatataagggtgtactgccgagtgcgtcctctgttgcctgggcaaacaaatcgttccaatacttttgatcaaatagatgatggaaaaattacaattgtcaccccttcaaaatatggcaaagaggggcggaaatctttcagtttcaacaaagtatttgggccattatcaacccaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

165

Amino Acids

18.49

Weight (kDa)

9.1

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	237
AciI	CCGC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	197, 332
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	145, 211, 275, 426, 463
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	4 cut(s)	82, 118, 198, 355
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	85, 476
ApeKI	GCWGC	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	452
AspA2I	CCTAGG	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	86, 476
AsuHPI	GGTGA	2 cut(s)	140, 409
AsuNHI	GCTAGC	1 cut(s)	37
AvrII	CCTAGG	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	112, 392
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	4 cut(s)	84, 120, 200, 357
BciVI	GTATCC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	38, 218
BfuAI	ACCTGC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	1 cut(s)	249
BlnI	CCTAGG	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	4 cut(s)	84, 120, 200, 357
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	86, 476
BmrFI	CCNGG	4 cut(s)	84, 120, 200, 357
BmsI	GCATC	2 cut(s)	40, 260
BmtI	GCTAGC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	82, 217, 356, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	4 cut(s)	84, 120, 200, 357
BseDI	CCNNGG	4 cut(s)	82, 217, 356, 490
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	87, 478
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	87, 478
Bsp143I	GATC	2 cut(s)	307, 385
BspACI	CCGC	1 cut(s)	445
BspANI	GGCC	2 cut(s)	87, 478
BspCNI	CTCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	237
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	4 cut(s)	82, 217, 356, 490
BssMI	GATC	2 cut(s)	307, 385
BssT1I	CCWWGG	2 cut(s)	217, 490
Bst2UI	CCWGG	4 cut(s)	84, 120, 200, 357
BstC8I	GCNNGC	2 cut(s)	39, 43
BstDEI	CTNAG	2 cut(s)	5, 96
BstKTI	GATC	2 cut(s)	310, 388
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	307, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	4 cut(s)	84, 120, 200, 357
BstSCI	CCNGG	4 cut(s)	82, 118, 198, 355
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	87, 478
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	39, 43
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	86, 476
CseI	GACGC	1 cut(s)	332
CsiI	ACCWGGT	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	196, 331
CviAII	CATG	2 cut(s)	233, 245
CviJI	RGCY	7 cut(s)	37, 45, 81, 87, 216, 242, 478
CviKI_1	RGCY	7 cut(s)	37, 45, 81, 87, 216, 242, 478
CviQI	GTAC	2 cut(s)	196, 331
DdeI	CTNAG	2 cut(s)	5, 96
DpnI	GATC	2 cut(s)	309, 387
DpnII	GATC	2 cut(s)	307, 385
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	217, 490
Eco32I	GATATC	1 cut(s)	133
EcoRII	CCWGG	4 cut(s)	82, 118, 198, 355
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	217, 490
ErhI	CCWWGG	2 cut(s)	217, 490
FaeI	CATG	2 cut(s)	236, 248
FaiI	YATR	9 cut(s)	150, 157, 159, 224, 234, 246, 292, 323, 432
FatI	CATG	2 cut(s)	232, 244
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	38, 218
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	87, 478
HgaI	GACGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	236, 248
HinfI	GANTC	2 cut(s)	92, 98
HphI	GGTGA	2 cut(s)	140, 409
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	97, 115, 312
Hpy188III	TCNNGA	2 cut(s)	255, 272
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	78, 432
HpyCH4V	TGCA	4 cut(s)	226, 232, 248, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	5, 96
Hsp92II	CATG	2 cut(s)	236, 248
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	307, 385
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	2 cut(s)	40, 260
MabI	ACCWGGT	1 cut(s)	118
MaeI	CTAG	2 cut(s)	38, 218
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	309, 387
MboI	GATC	2 cut(s)	307, 385
MboII	GAAGA	1 cut(s)	287
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	3 cut(s)	140, 405, 411
MlyI	GAGTC	2 cut(s)	86, 107
MnlI	CCTC	4 cut(s)	13, 196, 357, 433
MroXI	GAANNNNTTC	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	231
MspR9I	CCNGG	4 cut(s)	84, 120, 200, 357
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	4 cut(s)	84, 120, 200, 357
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	2 cut(s)	307, 385
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	236, 248
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	86, 106
PpsI	GAGTC	2 cut(s)	86, 106
Psp6I	CCWGG	4 cut(s)	82, 118, 198, 355
PspGI	CCWGG	4 cut(s)	82, 118, 198, 355
PspPI	GGNCC	2 cut(s)	86, 476
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	197, 332
RsaNI	GTAC	2 cut(s)	196, 331
RseI	CAYNNNNRTG	1 cut(s)	231
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	307, 385
Sau96I	GGNCC	2 cut(s)	86, 476
SchI	GAGTC	2 cut(s)	86, 107
ScrFI	CCNGG	4 cut(s)	84, 120, 200, 357
SetI	ASST	5 cut(s)	70, 121, 223, 231, 496
SexAI	ACCWGGT	1 cut(s)	118
SfaNI	GCATC	2 cut(s)	40, 260
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	140, 405, 411
SsiI	CCGC	1 cut(s)	445
SspMI	CTAG	2 cut(s)	38, 218
StyD4I	CCNGG	4 cut(s)	82, 118, 198, 355
StyI	CCWWGG	2 cut(s)	217, 490
TasI	AATT	3 cut(s)	140, 405, 411
TatI	WGTACW	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	191, 206
XmaJI	CCTAGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	38, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.