Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

83518100 .. 83521535

Gene Structure 3436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG530400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTGAGTAAAGTAATGGAGGAGTTTCAGCATCGGCTAGCAAGCCAAACTGAACTGGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGAGTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGAATGAAGAGAAAGCTGCGACTCAAATAAAGAAGGATGATTGTTGCAATAAAACATATGACCATCAAGAGGGATCAAAAGGCCAGTTTGTGAGACATAAAATGTTGGTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATTAGGATACCAGAAAGTTCTTGAAGAAAATCGCAAGTTATACAATCTGGTGCAGGATCTGAAAGGAAATATAAGGGTGTACTGCCGAGTGCGTCCTCTGTTGCCTGGGCAAACAAATCGTTCCAATACTTTTGATCAAATAGATGATGGAAAAATTACAATTGTCACCCCTTCAAAATATGGCAAAGAGGGGCGGAAATCTTTCAGTTTCAACAAAGTATTTGGGCCATTATCAACCCAAGAGGAGGTATTTTCAGATACGCAGCCTCTCATTCGGTCAGTTCTTGATGGTTACAATGTCTGTATATTTGCTGATGGTTACAATGTCATTGAGGATGATAAGCGTTTTCACATACAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTCCAAGGGATGGTATCTTCACCAAAAAGAACTTTTGGAGCTTGCTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

277

Amino Acids

31.32

Weight (kDa)

8.44

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	136 - 234	1.2e-23	Microtubule binding
Kinesin	PF00225	157 - 234	1.2e-11	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccI	GTMKAC	1 cut(s)	744
AciI	CCGC	1 cut(s)	577
AclWI	GGATC	2 cut(s)	217, 447
AfaI	GTAC	2 cut(s)	329, 464
AfiI	CCNNNNNNNGG	4 cut(s)	125, 205, 628, 790
AgsI	TTSAA	6 cut(s)	248, 277, 343, 407, 558, 595
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	4 cut(s)	82, 118, 330, 487
AluBI	AGCT	3 cut(s)	152, 775, 821
AluI	AGCT	3 cut(s)	152, 775, 821
Alw26I	GTCTC	2 cut(s)	105, 223
AlwI	GGATC	2 cut(s)	217, 447
AlwNI	CAGNNNCTG	1 cut(s)	442
AoxI	GGCC	3 cut(s)	85, 217, 608
ApeKI	GCWGC	3 cut(s)	152, 380, 646
Asp700I	GAANNNNTTC	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	86, 608
AsuHPI	GGTGA	3 cut(s)	140, 541, 792
AsuNHI	GCTAGC	1 cut(s)	37
AvrII	CCTAGG	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	139, 392, 658
BccI	CCATC	6 cut(s)	112, 207, 524, 665, 692, 784
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	4 cut(s)	84, 120, 332, 489
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	105, 223
BfaI	CTAG	2 cut(s)	38, 350
BfuAI	ACCTGC	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	153, 381, 647
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	3 cut(s)	154, 382, 648
Bme1390I	CCNGG	4 cut(s)	84, 120, 332, 489
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	86, 608
BmrFI	CCNGG	4 cut(s)	84, 120, 332, 489
BmsI	GCATC	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	82, 349, 488, 784
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 205, 628, 790
Bse1I	ACTGG	2 cut(s)	60, 220
BseBI	CCWGG	4 cut(s)	84, 120, 332, 489
BseDI	CCNNGG	4 cut(s)	82, 349, 488, 784
BseGI	GGATG	3 cut(s)	178, 724, 795
BseLI	CCNNNNNNNGG	4 cut(s)	125, 205, 628, 790
BseMII	CTCAG	2 cut(s)	87, 790
BseNI	ACTGG	2 cut(s)	60, 220
BseRI	GAGGAG	2 cut(s)	35, 641
BseXI	GCAGC	3 cut(s)	139, 392, 658
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	3 cut(s)	87, 219, 610
BslI	CCNNNNNNNGG	4 cut(s)	125, 205, 628, 790
BsmAI	GTCTC	2 cut(s)	105, 223
BsnI	GGCC	3 cut(s)	87, 219, 610
Bsp143I	GATC	3 cut(s)	209, 439, 517
BspACI	CCGC	1 cut(s)	577
BspANI	GGCC	3 cut(s)	87, 219, 610
BspCNI	CTCAG	2 cut(s)	88, 789
BspMI	ACCTGC	1 cut(s)	369
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	2 cut(s)	217, 447
BsrI	ACTGG	2 cut(s)	60, 220
BssECI	CCNNGG	4 cut(s)	82, 349, 488, 784
BssMI	GATC	3 cut(s)	209, 439, 517
BssT1I	CCWWGG	2 cut(s)	349, 784
Bst2UI	CCWGG	4 cut(s)	84, 120, 332, 489
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	39, 43, 823
BstDEI	CTNAG	3 cut(s)	5, 96, 776
BstF5I	GGATG	3 cut(s)	178, 724, 795
BstKTI	GATC	3 cut(s)	212, 442, 520
BstMAI	GTCTC	2 cut(s)	105, 223
BstMBI	GATC	3 cut(s)	209, 439, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	4 cut(s)	84, 120, 332, 489
BstSCI	CCNGG	4 cut(s)	82, 118, 330, 487
BstV1I	GCAGC	3 cut(s)	139, 392, 658
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	87, 219, 610
BtsCI	GGATG	3 cut(s)	178, 724, 795
BtsIMutI	CAGTG	1 cut(s)	784
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	39, 43, 823
CaiI	CAGNNNCTG	1 cut(s)	442
Cfr13I	GGNCC	2 cut(s)	86, 608
CseI	GACGC	1 cut(s)	464
CsiI	ACCWGGT	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	328, 463
CviAII	CATG	2 cut(s)	365, 377
CviQI	GTAC	2 cut(s)	328, 463
DdeI	CTNAG	3 cut(s)	5, 96, 776
DpnI	GATC	3 cut(s)	211, 441, 519
DpnII	GATC	3 cut(s)	209, 439, 517
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	349, 784
Eco32I	GATATC	1 cut(s)	133
EcoRII	CCWGG	4 cut(s)	82, 118, 330, 487
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	349, 784
ErhI	CCWWGG	2 cut(s)	349, 784
FaeI	CATG	2 cut(s)	368, 380
FatI	CATG	2 cut(s)	364, 376
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	153, 381, 647
FokI	GGATG	3 cut(s)	185, 731, 802
Fsp4HI	GCNGC	3 cut(s)	153, 381, 647
FspBI	CTAG	2 cut(s)	38, 350
GluI	GCNGC	3 cut(s)	153, 381, 647
HaeIII	GGCC	3 cut(s)	87, 219, 610
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	368, 380
HinfI	GANTC	3 cut(s)	92, 98, 157
HphI	GGTGA	3 cut(s)	140, 541, 792
Hpy166II	GTNNAC	2 cut(s)	463, 745
Hpy188I	TCNGA	4 cut(s)	97, 115, 444, 640
Hpy188III	TCNNGA	5 cut(s)	136, 203, 269, 404, 668
Hpy8I	GTNNAC	2 cut(s)	463, 745
HpyAV	CCTTC	3 cut(s)	78, 163, 564
HpyCH4V	TGCA	5 cut(s)	183, 358, 364, 380, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	3 cut(s)	5, 96, 776
Hsp92II	CATG	2 cut(s)	368, 380
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	209, 439, 517
LmnI	GCTCC	2 cut(s)	818, 830
Lsp1109I	GCAGC	3 cut(s)	139, 392, 658
LweI	GCATC	1 cut(s)	40
MabI	ACCWGGT	1 cut(s)	118
MaeI	CTAG	2 cut(s)	38, 350
MaeIII	GTNAC	3 cut(s)	547, 674, 701
MalI	GATC	3 cut(s)	211, 441, 519
MboI	GATC	3 cut(s)	209, 439, 517
MboII	GAAGA	3 cut(s)	155, 419, 789
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	4 cut(s)	272, 537, 543, 829
MlyI	GAGTC	3 cut(s)	86, 107, 151
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	832
MslI	CAYNNNNRTG	1 cut(s)	363
MspR9I	CCNGG	4 cut(s)	84, 120, 332, 489
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	4 cut(s)	84, 120, 332, 489
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	209, 439, 517
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	368, 380
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	547
PaqCI	CACCTGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	790
PkrI	GCNGC	3 cut(s)	154, 382, 648
PleI	GAGTC	3 cut(s)	86, 106, 151
PpsI	GAGTC	3 cut(s)	86, 106, 151
Psp6I	CCWGG	4 cut(s)	82, 118, 330, 487
PspGI	CCWGG	4 cut(s)	82, 118, 330, 487
PspPI	GGNCC	2 cut(s)	86, 608
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	329, 464
RsaNI	GTAC	2 cut(s)	328, 463
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	832
SatI	GCNGC	3 cut(s)	153, 381, 647
Sau3AI	GATC	3 cut(s)	209, 439, 517
Sau96I	GGNCC	2 cut(s)	86, 608
SchI	GAGTC	3 cut(s)	86, 107, 151
ScrFI	CCNGG	4 cut(s)	84, 120, 332, 489
SexAI	ACCWGGT	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	272, 537, 543, 829
SsiI	CCGC	1 cut(s)	577
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	38, 350
StyD4I	CCNGG	4 cut(s)	82, 118, 330, 487
StyI	CCWWGG	2 cut(s)	349, 784
TaqI	TCGA	1 cut(s)	750
TaqII	GACCGA	1 cut(s)	648
TasI	AATT	4 cut(s)	272, 537, 543, 829
TatI	WGTACW	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	832
Tru9I	TTAA	1 cut(s)	832
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	152, 380, 646
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	156, 323, 338
TspRI	CASTG	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	790
XmaJI	CCTAGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	38, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.