RchiOBHm_Chr3g0456641
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
6095595 .. 6098743
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42345

Sequence Viewer

Length: 1188 bp
ATGGCAACGGAGCAATCATTGCCTTTTAATGTTGCTTCTGTGGTTGAAGCCGTTCTTCAACAGCATGGGACTCGTCTCAGCGATGTGGGATTGGCTTCAAGGAAGGCAGAGGAAGCTTCTGTGAGAAGGTACGAAGCAGCTGGGTGGCTTAGAAAGACGGTTGGAGTGGTGGGCGGTAAAGATTTGCCAGCTGAGCCCTCTGAAGAAGATTTTAGGCTTGGATTGCGAAGTGGAATAATCCTTTGCAATGTTATTAACAAGGTTCAACCCGGAGCTGTGGCAAAGGTTGTTGAAGGCCCTTGTGACTCCGTGCCTATTCCTGACGGGGCAGCTCTATCAGCATTTCAGTACTTCGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGGGAGGAAAATCTGCAAGTGCAAGGATTGTCAACTGTGTTCTAGCACTAAAATCATATAGTGACTGGAAACAAGCAGGCGGAAGTGGATCATGGAAATTTGTTGGAAACTTGAAACCACCTATCTCTGGGAAACCCTTTCTGCGAAAAAATTCTGAACCATTCATGAGTTCTTTTACAAGGACCTCATCATGGAGTGAAAGATCGCAAGATAGTTTCTCCAGTGAAGATCCCAATGAAGCAAGTTCTTCTCATTCCTTACACATGTTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGAGTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGAATGAAGAGAAAGCTGCGACTCAAATAAAGAAGGATGATTGTTGCAATCAAACATATGACCATCACGAGGGATCAAAAGGCCAGTTTATGAAGCATAAACTGTTGGTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGAAAATCGCAAGTTATACAATCTGGTGCAGGATCTGAAAGGTGAGTTTCTGGTCCTCCTATGTAAATCAATCCCTATATGTTTTCTACAAATTTAA

Protein Analysis

395

Amino Acids

43.52

Weight (kDa)

6.24

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 43 - 162 1.9e-12 Calponin homology (CH) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1053
Acc36I ACCTGC 1 cut(s) 1053
AciI CCGC 2 cut(s) 174, 507
AclWI GGATC 4 cut(s) 523, 650, 901, 1131
AcsI RAATTY 5 cut(s) 367, 524, 577, 732, 1182
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 4 cut(s) 131, 350, 699, 1013
AfiI CCNNNNNNNGG 4 cut(s) 554, 618, 809, 889
AflIII ACRYGT 1 cut(s) 690
AhdI GACNNNNNGTC 1 cut(s) 781
AjnI CCWGG 3 cut(s) 766, 802, 1014
AluBI AGCT 6 cut(s) 116, 140, 191, 275, 332, 836
AluI AGCT 6 cut(s) 116, 140, 191, 275, 332, 836
Alw26I GTCTC 2 cut(s) 80, 789
AlwI GGATC 4 cut(s) 523, 650, 901, 1131
AlwNI CAGNNNCTG 1 cut(s) 1126
AoxI GGCC 3 cut(s) 295, 769, 901
ApeKI GCWGC 4 cut(s) 137, 329, 836, 1064
ApoI RAATTY 5 cut(s) 367, 524, 577, 732, 1182
Asp700I GAANNNNTTC 3 cut(s) 51, 577, 732
AspA2I CCTAGG 1 cut(s) 1033
AspS9I GGNCC 4 cut(s) 296, 609, 770, 1144
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 824, 1145
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 2 cut(s) 609, 1144
AvrII CCTAGG 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 887
BbvI GCAGC 4 cut(s) 149, 341, 823, 1076
BccI CCATC 2 cut(s) 796, 891
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 3 cut(s) 768, 804, 1016
BciVI GTATCC 1 cut(s) 1067
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 80, 789
BfaI CTAG 2 cut(s) 470, 1034
BfuAI ACCTGC 1 cut(s) 1053
BfuI GTATCC 1 cut(s) 1067
BisI GCNGC 4 cut(s) 138, 330, 837, 1065
BlnI CCTAGG 1 cut(s) 1033
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 4 cut(s) 139, 331, 838, 1066
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 4 cut(s) 270, 768, 804, 1016
Bme18I GGWCC 2 cut(s) 609, 1144
BmeRI GACNNNNNGTC 1 cut(s) 781
BmgT120I GGNCC 4 cut(s) 296, 609, 770, 1144
BmrFI CCNGG 4 cut(s) 270, 768, 804, 1016
BmsI GCATC 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 631
Bpu1102I GCTNAGC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 766, 1033
Bsc4I CCNNNNNNNGG 4 cut(s) 554, 618, 809, 889
Bse1I ACTGG 3 cut(s) 497, 648, 904
Bse3DI GCAATG 2 cut(s) 17, 253
BseBI CCWGG 3 cut(s) 768, 804, 1016
BseDI CCNNGG 2 cut(s) 766, 1033
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 4 cut(s) 554, 618, 809, 889
BseMI GCAATG 2 cut(s) 17, 253
BseMII CTCAG 3 cut(s) 91, 183, 771
BseNI ACTGG 3 cut(s) 497, 648, 904
BseXI GCAGC 4 cut(s) 149, 341, 823, 1076
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 1139
BshFI GGCC 3 cut(s) 297, 771, 903
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 4 cut(s) 554, 618, 809, 889
BsmAI GTCTC 2 cut(s) 80, 789
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 3 cut(s) 297, 771, 903
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 5 cut(s) 515, 629, 655, 893, 1123
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 2 cut(s) 174, 507
BspANI GGCC 3 cut(s) 297, 771, 903
BspCNI CTCAG 3 cut(s) 90, 184, 772
BspHI TCATGA 1 cut(s) 591
BspMI ACCTGC 1 cut(s) 1053
BspPI GGATC 4 cut(s) 523, 650, 901, 1131
BspT104I TTCGAA 1 cut(s) 354
BsrDI GCAATG 2 cut(s) 17, 253
BsrI ACTGG 3 cut(s) 497, 648, 904
BssECI CCNNGG 2 cut(s) 766, 1033
BssMI GATC 5 cut(s) 515, 629, 655, 893, 1123
BssSI CACGAG 1 cut(s) 887
BssT1I CCWWGG 1 cut(s) 1033
Bst2BI CACGAG 1 cut(s) 887
Bst2UI CCWGG 3 cut(s) 768, 804, 1016
Bst4CI ACNGT 3 cut(s) 160, 464, 924
Bst6I CTCTTC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 701
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 189, 505
BstDEI CTNAG 4 cut(s) 77, 149, 192, 780
BstF5I GGATG 1 cut(s) 862
BstKTI GATC 5 cut(s) 518, 632, 658, 896, 1126
BstMAI GTCTC 2 cut(s) 80, 789
BstMBI GATC 5 cut(s) 515, 629, 655, 893, 1123
BstMWI GCNNNNNNNGC 6 cut(s) 19, 113, 193, 223, 338, 1064
BstNI CCWGG 3 cut(s) 768, 804, 1016
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 4 cut(s) 268, 766, 802, 1014
BstV1I GCAGC 4 cut(s) 149, 341, 823, 1076
BstX2I RGATCY 2 cut(s) 655, 1123
BstYI RGATCY 2 cut(s) 655, 1123
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 3 cut(s) 297, 771, 903
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 862
BtsIMutI CAGTG 1 cut(s) 655
BveI ACCTGC 1 cut(s) 1053
Cac8I GCNNGC 2 cut(s) 189, 505
CaiI CAGNNNCTG 1 cut(s) 1126
CciI TCATGA 1 cut(s) 591
Cfr13I GGNCC 4 cut(s) 296, 609, 770, 1144
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 4 cut(s) 130, 349, 698, 1012
CviAII CATG 7 cut(s) 65, 519, 592, 618, 691, 1049, 1061
CviQI GTAC 4 cut(s) 130, 349, 698, 1012
DdeI CTNAG 4 cut(s) 77, 149, 192, 780
DpnI GATC 5 cut(s) 517, 631, 657, 895, 1125
DpnII GATC 5 cut(s) 515, 629, 655, 893, 1123
DriI GACNNNNNGTC 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 822
Eam1105I GACNNNNNGTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 822
EciI GGCGGA 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 1033
Eco24I GRGCYC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 817
Eco47I GGWCC 2 cut(s) 609, 1144
Eco57I CTGAAG 1 cut(s) 222
EcoO109I RGGNCCY 2 cut(s) 296, 609
EcoRII CCWGG 3 cut(s) 766, 802, 1014
EcoRV GATATC 1 cut(s) 817
EcoT14I CCWWGG 1 cut(s) 1033
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 1033
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 7 cut(s) 68, 522, 595, 621, 694, 1052, 1064
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 82
FatI CATG 7 cut(s) 64, 518, 591, 617, 690, 1048, 1060
FauNDI CATATG 1 cut(s) 877
Fnu4HI GCNGC 4 cut(s) 138, 330, 837, 1065
FokI GGATG 1 cut(s) 869
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 138, 330, 837, 1065
FspBI CTAG 2 cut(s) 470, 1034
GluI GCNGC 4 cut(s) 138, 330, 837, 1065
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 631
HaeIII GGCC 3 cut(s) 297, 771, 903
HapII CCGG 1 cut(s) 270
Hin1II CATG 7 cut(s) 68, 522, 595, 621, 694, 1052, 1064
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 5 cut(s) 70, 305, 776, 782, 841
HpaII CCGG 1 cut(s) 270
HphI GGTGA 2 cut(s) 824, 1145
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 7 cut(s) 202, 365, 418, 583, 781, 799, 1128
Hpy188III TCNNGA 7 cut(s) 320, 592, 820, 887, 953, 1071, 1088
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 5 cut(s) 97, 120, 287, 762, 847
HpyCH4III ACNGT 3 cut(s) 160, 464, 924
HpyCH4IV ACGT 2 cut(s) 360, 700
HpyCH4V TGCA 8 cut(s) 246, 443, 449, 867, 1042, 1048, 1064, 1120
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 113, 193, 223, 338, 1064
HpyF3I CTNAG 4 cut(s) 77, 149, 192, 780
HpySE526I ACGT 2 cut(s) 360, 700
Hsp92II CATG 7 cut(s) 68, 522, 595, 621, 694, 1052, 1064
Kzo9I GATC 5 cut(s) 515, 629, 655, 893, 1123
LmnI GCTCC 2 cut(s) 10, 272
Lsp1109I GCAGC 4 cut(s) 149, 341, 823, 1076
LweI GCATC 1 cut(s) 1076
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 2 cut(s) 470, 1034
MaeII ACGT 2 cut(s) 360, 700
MaeIII GTNAC 2 cut(s) 302, 488
MalI GATC 5 cut(s) 517, 631, 657, 895, 1125
MboI GATC 5 cut(s) 515, 629, 655, 893, 1123
MboII GAAGA 8 cut(s) 47, 215, 218, 665, 666, 740, 839, 1103
MflI RGATCY 2 cut(s) 655, 1123
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 7 cut(s) 367, 389, 524, 577, 732, 956, 1182
MlyI GAGTC 5 cut(s) 64, 299, 770, 791, 835
MmeI TCCRAC 3 cut(s) 142, 425, 511
MnlI CCTC 9 cut(s) 103, 208, 379, 424, 425, 622, 883, 1012, 1157
MroXI GAANNNNTTC 3 cut(s) 51, 577, 732
MseI TTAA 3 cut(s) 27, 255, 1186
MslI CAYNNNNRTG 1 cut(s) 1047
MspA1I CMGCKG 2 cut(s) 140, 191
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 4 cut(s) 270, 768, 804, 1016
MvaI CCWGG 3 cut(s) 768, 804, 1016
MwoI GCNNNNNNNGC 6 cut(s) 19, 113, 193, 223, 338, 1064
NciI CCSGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 877
NdeII GATC 5 cut(s) 515, 629, 655, 893, 1123
NlaIII CATG 7 cut(s) 68, 522, 595, 621, 694, 1052, 1064
NmuCI GTSAC 2 cut(s) 302, 488
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 354
PagI TCATGA 1 cut(s) 591
PaqCI CACCTGC 1 cut(s) 1053
PciI ACATGT 1 cut(s) 690
PdmI GAANNNNTTC 3 cut(s) 51, 577, 732
PkrI GCNGC 4 cut(s) 139, 331, 838, 1066
PleI GAGTC 5 cut(s) 64, 299, 770, 790, 835
PpsI GAGTC 5 cut(s) 64, 299, 770, 790, 835
Ppu21I YACGTR 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 609
PscI ACATGT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 609
Psp6I CCWGG 3 cut(s) 766, 802, 1014
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 3 cut(s) 766, 802, 1014
PspPI GGNCC 4 cut(s) 296, 609, 770, 1144
PspPPI RGGWCCY 1 cut(s) 609
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstNI CAGNNNCTG 1 cut(s) 1126
PsuI RGATCY 2 cut(s) 655, 1123
PvuII CAGCTG 2 cut(s) 140, 191
RsaI GTAC 4 cut(s) 131, 350, 699, 1013
RsaNI GTAC 4 cut(s) 130, 349, 698, 1012
RseI CAYNNNNRTG 1 cut(s) 1047
SaqAI TTAA 3 cut(s) 27, 255, 1186
SatI GCNGC 4 cut(s) 138, 330, 837, 1065
Sau3AI GATC 5 cut(s) 515, 629, 655, 893, 1123
Sau96I GGNCC 4 cut(s) 296, 609, 770, 1144
ScaI AGTACT 1 cut(s) 350
SchI GAGTC 5 cut(s) 64, 299, 770, 791, 835
ScrFI CCNGG 4 cut(s) 270, 768, 804, 1016
SduI GDGCHC 1 cut(s) 198
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 1 cut(s) 1076
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 2 cut(s) 609, 1144
SmiMI CAYNNNNRTG 1 cut(s) 1047
Sse9I AATT 7 cut(s) 367, 389, 524, 577, 732, 956, 1182
SsiI CCGC 2 cut(s) 174, 507
SspI AATATT 1 cut(s) 949
SspMI CTAG 2 cut(s) 470, 1034
StyD4I CCNGG 4 cut(s) 268, 766, 802, 1014
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 3 cut(s) 160, 464, 924
TaiI ACGT 2 cut(s) 363, 703
TaqI TCGA 1 cut(s) 354
TasI AATT 7 cut(s) 367, 389, 524, 577, 732, 956, 1182
TatI WGTACW 1 cut(s) 348
Tru1I TTAA 3 cut(s) 27, 255, 1186
Tru9I TTAA 3 cut(s) 27, 255, 1186
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 2 cut(s) 302, 488
TseI GCWGC 4 cut(s) 137, 329, 836, 1064
Tsp45I GTSAC 2 cut(s) 302, 488
TspDTI ATGAA 6 cut(s) 580, 678, 840, 926, 1007, 1022
TspGWI ACGGA 2 cut(s) 23, 298
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 609, 1144
XapI RAATTY 5 cut(s) 367, 524, 577, 732, 1182
XceI RCATGY 1 cut(s) 694
XmaJI CCTAGG 1 cut(s) 1033
XmnI GAANNNNTTC 3 cut(s) 51, 577, 732
XspI CTAG 2 cut(s) 470, 1034
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.