Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001563.1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

95582 .. 97748

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001563.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgctgagtaaagtaatggaggagtttcagcatcggctagcaagccaaactgaactggtaaaagcaccttccaaagatagccctggccctgactctgagtctccatctctttctgaacctggttctggtgatatcaaggtcattgaggatgataagcgttttcacatacaggtctacctcgactttggcttggctatacccaagctcagtgtccaagggatggtatcttcactaaaagaacttttggagcttgctccaattaagaaggtaacagtatatctggttttcagttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

98

Amino Acids

10.81

Weight (kDa)

5.29

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	125, 220
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	82, 118
AluBI	AGCT	2 cut(s)	205, 250
AluI	AGCT	2 cut(s)	205, 250
Alw26I	GTCTC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	140
AsuNHI	GCTAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	112, 214
BciT130I	CCWGG	2 cut(s)	84, 120
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	84, 120
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	84, 120
BmsI	GCATC	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	82, 214
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 220
Bse1I	ACTGG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	84, 120
BseDI	CCNNGG	2 cut(s)	82, 214
BseGI	GGATG	2 cut(s)	154, 225
BseLI	CCNNNNNNNGG	2 cut(s)	125, 220
BseMII	CTCAG	2 cut(s)	87, 220
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	125, 220
BsmAI	GTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	88, 219
BspOI	GCTAGC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	82, 214
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	84, 120
Bst4CI	ACNGT	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	39, 43, 252
BstDEI	CTNAG	3 cut(s)	5, 96, 206
BstF5I	GGATG	2 cut(s)	154, 225
BstMAI	GTCTC	1 cut(s)	105
BstNI	CCWGG	2 cut(s)	84, 120
BstSCI	CCNGG	2 cut(s)	82, 118
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	154, 225
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	3 cut(s)	39, 43, 252
Cfr13I	GGNCC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	118
CviJI	RGCY	8 cut(s)	37, 45, 81, 87, 189, 194, 205, 250
CviKI_1	RGCY	8 cut(s)	37, 45, 81, 87, 189, 194, 205, 250
DdeI	CTNAG	3 cut(s)	5, 96, 206
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	82, 118
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaiI	YATR	3 cut(s)	167, 197, 277
FblI	GTMKAC	1 cut(s)	174
FokI	GGATG	2 cut(s)	161, 232
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	92, 98
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	97, 115
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	78, 259
HpyCH4III	ACNGT	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	5, 96, 206
LmnI	GCTCC	2 cut(s)	247, 259
LpnPI	CCDG	9 cut(s)	41, 69, 96, 102, 105, 111, 132, 155, 266
LweI	GCATC	1 cut(s)	40
MabI	ACCWGGT	1 cut(s)	118
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	219
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	86, 107
MnlI	CCTC	3 cut(s)	13, 139, 188
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	84, 120
MvaI	CCWGG	2 cut(s)	84, 120
NheI	GCTAGC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	220
PleI	GAGTC	2 cut(s)	86, 106
PpsI	GAGTC	2 cut(s)	86, 106
Psp6I	CCWGG	2 cut(s)	82, 118
PspGI	CCWGG	2 cut(s)	82, 118
PspPI	GGNCC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	86, 107
ScrFI	CCNGG	2 cut(s)	84, 120
SetI	ASST	8 cut(s)	70, 121, 141, 174, 180, 207, 252, 270
SexAI	ACCWGGT	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	82, 118
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	214
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.