Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

22264305 .. 22265721

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGCAGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTGTAAAAGCACCTTCCAAAGATAGCCCTGGCCCTGACTCTGACTCTCCATCTCTTTCTAAACCTGGTTATGGTGATATCAAGAATGAAGAGAAAGCTGCGACTGAAATAAAGAAGGATGATTGTTGCAATCAAACATATGACCATCAAGAGGGATCAAAAGAAAAATATTCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTCAAGAACATCGCCACAACACATCGGTCGCTGCTGGATACATACGAGACAGTGCATTTGAACCGCAATGTTGGGCTGCTCCAGGGATACATATGATACCAGCTTCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

147

Amino Acids

16.3

Weight (kDa)

6.15

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	294
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	2 cut(s)	15, 254
AfiI	CCNNNNNNNGG	2 cut(s)	125, 205
AgsI	TTSAA	3 cut(s)	268, 332, 389
AjnI	CCWGG	4 cut(s)	82, 118, 255, 409
AluBI	AGCT	3 cut(s)	10, 152, 431
AluI	AGCT	3 cut(s)	10, 152, 431
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	5 cut(s)	7, 152, 305, 359, 404
ApoI	RAATTY	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	1 cut(s)	48
AspA2I	CCTAGG	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	274
BbvI	GCAGC	5 cut(s)	19, 139, 317, 346, 391
BccI	CCATC	2 cut(s)	112, 207
BciT130I	CCWGG	4 cut(s)	84, 120, 257, 411
BciVI	GTATCC	3 cut(s)	308, 359, 408
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	3 cut(s)	11, 275, 439
BfuAI	ACCTGC	1 cut(s)	294
BfuI	GTATCC	3 cut(s)	308, 359, 408
BisI	GCNGC	5 cut(s)	8, 153, 306, 360, 405
BlnI	CCTAGG	1 cut(s)	274
BlsI	GCNGC	5 cut(s)	9, 154, 307, 361, 406
Bme1390I	CCNGG	4 cut(s)	84, 120, 257, 411
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	4 cut(s)	84, 120, 257, 411
BmsI	GCATC	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	82, 274, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 205
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	4 cut(s)	84, 120, 257, 411
BseDI	CCNNGG	3 cut(s)	82, 274, 410
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	125, 205
BseMI	GCAATG	1 cut(s)	401
BseXI	GCAGC	5 cut(s)	19, 139, 317, 346, 391
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	125, 205
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	82, 274, 410
BssMI	GATC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	4 cut(s)	84, 120, 257, 411
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	4 cut(s)	84, 120, 257, 411
BstSCI	CCNGG	4 cut(s)	82, 118, 255, 409
BstV1I	GCAGC	5 cut(s)	19, 139, 317, 346, 391
BsuI	GTATCC	3 cut(s)	308, 359, 408
BsuRI	GGCC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	14, 253
CviAII	CATG	2 cut(s)	290, 302
CviJI	RGCY	8 cut(s)	10, 81, 87, 152, 273, 299, 404, 431
CviKI_1	RGCY	8 cut(s)	10, 81, 87, 152, 273, 299, 404, 431
CviQI	GTAC	2 cut(s)	14, 253
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	133
EcoRII	CCWGG	4 cut(s)	82, 118, 255, 409
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	293, 305
FaiI	YATR	9 cut(s)	126, 193, 195, 281, 291, 303, 371, 420, 422
FatI	CATG	2 cut(s)	289, 301
FauNDI	CATATG	2 cut(s)	193, 420
Fnu4HI	GCNGC	5 cut(s)	8, 153, 306, 360, 405
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	5 cut(s)	8, 153, 306, 360, 405
FspBI	CTAG	3 cut(s)	11, 275, 439
GluI	GCNGC	5 cut(s)	8, 153, 306, 360, 405
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	293, 305
HinfI	GANTC	2 cut(s)	92, 98
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	5 cut(s)	136, 203, 228, 312, 332
HpyAV	CCTTC	2 cut(s)	78, 163
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	5 cut(s)	183, 283, 289, 305, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	293, 305
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	5 cut(s)	19, 139, 317, 346, 391
LweI	GCATC	1 cut(s)	317
MabI	ACCWGGT	1 cut(s)	118
MaeI	CTAG	3 cut(s)	11, 275, 439
MaeII	ACGT	1 cut(s)	16
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	3 cut(s)	56, 155, 320
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	86, 92
MnlI	CCTC	2 cut(s)	199, 253
MroXI	GAANNNNTTC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	84, 120, 257, 411
MvaI	CCWGG	4 cut(s)	84, 120, 257, 411
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeI	CATATG	2 cut(s)	193, 420
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	293, 305
PaqCI	CACCTGC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	48
PkrI	GCNGC	5 cut(s)	9, 154, 307, 361, 406
PleI	GAGTC	2 cut(s)	86, 92
PpsI	GAGTC	2 cut(s)	86, 92
Ppu21I	YACGTR	1 cut(s)	17
Psp6I	CCWGG	4 cut(s)	82, 118, 255, 409
PspGI	CCWGG	4 cut(s)	82, 118, 255, 409
PspPI	GGNCC	1 cut(s)	86
PsrI	GAACNNNNNNTAC	1 cut(s)	38
RsaI	GTAC	2 cut(s)	15, 254
RsaNI	GTAC	2 cut(s)	14, 253
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	5 cut(s)	8, 153, 306, 360, 405
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	86, 92
ScrFI	CCNGG	4 cut(s)	84, 120, 257, 411
SetI	ASST	9 cut(s)	12, 19, 70, 121, 154, 280, 288, 433, 440
SexAI	ACCWGGT	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	1 cut(s)	392
SspI	AATATT	1 cut(s)	224
SspMI	CTAG	3 cut(s)	11, 275, 439
StyD4I	CCNGG	4 cut(s)	82, 118, 255, 409
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	19
TaqII	GACCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	48
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	5 cut(s)	7, 152, 305, 359, 404
TspDTI	ATGAA	4 cut(s)	17, 156, 248, 263
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	48
XmaJI	CCTAGG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	3 cut(s)	11, 275, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.