Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

59044815 .. 59045750

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG394600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGTTCTTTTACAAGGACCTTATCATGGAGTGAAAGATTGCAAGATAGTTTCTCCAGTGAAGATCCCAATGAAGCAAGTTCTTCTCATTCCTTACACAGGCTAGTACGTGAAGTTCTTTTGGACAAAAAACAGGAAGAAATTCCATTTGTAAAAGCACCTTCCAAAGATAGCCCTAGCCCTGACTCTGACTCTCCATCTCTTTCTGAACCTGGTTCTGGTGATATCAAGAATGAAGAGAAAGCTGCGACTGAAATAAAGAAGGATGATTGTTGCAATCAAACATATGACCATCAAGAGGGATCAAAAGAAAAATATTCAGGAATTGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

111

Amino Acids

12.38

Weight (kDa)

4.74

Isoelectric Point (pI)

79.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	59, 310
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	4 cut(s)	27, 99, 218, 298
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AlwI	GGATC	2 cut(s)	59, 310
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	205, 300
BciT130I	CCWGG	1 cut(s)	213
BfaI	CTAG	2 cut(s)	104, 177
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 99, 218, 298
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	4 cut(s)	27, 99, 218, 298
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	232
BslI	CCNNNNNNNGG	4 cut(s)	27, 99, 218, 298
Bsp143I	GATC	2 cut(s)	64, 302
BspPI	GGATC	2 cut(s)	59, 310
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	64, 302
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	67, 305
BstMBI	GATC	2 cut(s)	64, 302
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	18
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	4 cut(s)	103, 174, 180, 245
CviKI_1	RGCY	4 cut(s)	103, 174, 180, 245
CviQI	GTAC	1 cut(s)	107
DpnI	GATC	2 cut(s)	66, 304
DpnII	GATC	2 cut(s)	64, 302
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	226
FaeI	CATG	1 cut(s)	30
FaiI	YATR	4 cut(s)	28, 286, 288, 334
FatI	CATG	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	104, 177
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	40
Hin1II	CATG	1 cut(s)	30
HinfI	GANTC	2 cut(s)	185, 191
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	190, 208
Hpy188III	TCNNGA	3 cut(s)	229, 296, 321
HpyAV	CCTTC	2 cut(s)	171, 256
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	43, 276
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	64, 302
LpnPI	CCDG	8 cut(s)	70, 85, 119, 195, 198, 204, 225, 306
Lsp1109I	GCAGC	1 cut(s)	232
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	2 cut(s)	104, 177
MaeII	ACGT	1 cut(s)	109
MalI	GATC	2 cut(s)	66, 304
MboI	GATC	2 cut(s)	64, 302
MboII	GAAGA	4 cut(s)	74, 75, 149, 248
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	141, 324
MlyI	GAGTC	2 cut(s)	179, 185
MnlI	CCTC	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	2 cut(s)	64, 302
NlaIII	CATG	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	179, 185
PpsI	GAGTC	2 cut(s)	179, 185
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	99, 131
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	64, 302
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	2 cut(s)	179, 185
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	5 cut(s)	23, 112, 163, 214, 247
SexAI	ACCWGGT	1 cut(s)	211
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	2 cut(s)	141, 324
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	104, 177
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	112
TasI	AATT	2 cut(s)	141, 324
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	87, 249
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	2 cut(s)	104, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.