Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000894.1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

168696 .. 169748

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000894.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggcgttgggcaaggtgaaggagctcgtctcgtccaatccgttgacaaaacatgtttgtggcatatgcaagaagtggaatcagcctgacagtggaagttgggttgttgaaggcccttgtgactctgtgcctattcctgacggggcagctctatcagcatttcaaaacttcaaaaacgtcagaaatttccttgtggctgtggaggaattggggcttccaacctttgaagcctctgatttggaacaggttggtgctaagaatacatttatggctgtgcacttgcagattttttgttttagttttgtggtgacacttatccaaattttgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

110

Amino Acids

11.97

Weight (kDa)

5.55

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	184, 321
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	110, 164, 172, 227
AluBI	AGCT	2 cut(s)	25, 149
AluI	AGCT	2 cut(s)	25, 149
Alw21I	GWGCWC	2 cut(s)	27, 279
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	184, 321
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	28, 319
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	27, 279
BbvI	GCAGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	27, 279
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	27, 279
BspANI	GGCC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	8 cut(s)	25, 85, 114, 149, 197, 214, 230, 272
CviKI_1	RGCY	8 cut(s)	25, 85, 114, 149, 197, 214, 230, 272
DdeI	CTNAG	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	56
FaiI	YATR	4 cut(s)	54, 65, 67, 269
FatI	CATG	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	79, 122
HphI	GGTGA	2 cut(s)	28, 319
Hpy166II	GTNNAC	2 cut(s)	45, 277
Hpy188I	TCNGA	2 cut(s)	182, 235
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	45, 277
HpyAV	CCTTC	2 cut(s)	13, 104
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	69, 277, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	99, 150, 230
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	119, 307
MhlI	GDGCHC	2 cut(s)	27, 279
MluCI	AATT	3 cut(s)	184, 206, 321
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	196, 241
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	65
NlaIII	CATG	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	119, 307
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	27, 279
SetI	ASST	6 cut(s)	18, 27, 151, 180, 224, 249
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	184, 206, 321
SstI	GAGCTC	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	180
TasI	AATT	3 cut(s)	184, 206, 321
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	119, 307
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	119, 307
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	184, 321
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.