Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

64127396 .. 64128693

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0465500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGATAAGAGCATGATAGGAGATCTGGATTCGCTTCCAGAGGAAGATAAGCTCAGAATGGCCACCATGATCGACCAGCTCCAAATCCGCGACAGTTTAAGGATGTACAACTCACTTGTCGAGAGATGCTTCAATGATTGTGTTGACACTTTCAAGCACAAATCACTGCAGAAGCAAGAGGAAACCTGTGTTCGGCGATGTGCTGAGAAGTTTCTCAAGCATTCGATGCGCGTTGGCATGAGGTTTGCAGAGCTTAACCAGGGAGCTGCAACCCAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

6.1

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 84	5.7e-22	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 231
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	133, 154
AjnI	CCWGG	2 cut(s)	258, 273
AluBI	AGCT	4 cut(s)	52, 79, 253, 266
AluI	AGCT	4 cut(s)	52, 79, 253, 266
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	260, 275
BfaI	CTAG	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	260, 275
BmrFI	CCNGG	2 cut(s)	260, 275
BmsI	GCATC	2 cut(s)	116, 216
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	259, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	260, 275
BseDI	CCNNGG	2 cut(s)	259, 273
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	67, 195
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	90, 231
BshFI	GGCC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	22, 69
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	66, 196
BspFNI	CGCG	2 cut(s)	90, 231
BspMAI	CTGCAG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	259, 273
BssMI	GATC	2 cut(s)	22, 69
Bst2UI	CCWGG	2 cut(s)	260, 275
Bst4CI	ACNGT	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	53, 204
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	2 cut(s)	90, 231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	25, 72
BstMBI	GATC	2 cut(s)	22, 69
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	260, 275
BstSCI	CCNGG	2 cut(s)	258, 273
BstSFI	CTRYAG	1 cut(s)	167
BstUI	CGCG	2 cut(s)	90, 231
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	13, 67, 238
CviJI	RGCY	5 cut(s)	52, 62, 79, 253, 266
CviKI_1	RGCY	5 cut(s)	52, 62, 79, 253, 266
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	53, 204
DpnI	GATC	2 cut(s)	24, 71
DpnII	GATC	2 cut(s)	22, 69
EaeI	YGGCCR	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	258, 273
FaeI	CATG	3 cut(s)	16, 70, 241
FaiI	YATR	3 cut(s)	14, 68, 239
FatI	CATG	3 cut(s)	12, 66, 237
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	16, 70, 241
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	3 cut(s)	26, 38, 121
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	169, 248, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	2 cut(s)	53, 204
Hsp92II	CATG	3 cut(s)	16, 70, 241
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	22, 69
LmnI	GCTCC	2 cut(s)	84, 263
LpnPI	CCDG	7 cut(s)	11, 51, 89, 199, 245, 260, 272
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	116, 216
MaeI	CTAG	1 cut(s)	280
MalI	GATC	2 cut(s)	24, 71
MboI	GATC	2 cut(s)	22, 69
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	3 cut(s)	34, 172, 234
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	98, 255
Msp20I	TGGCCA	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	260, 275
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	260, 275
MvnI	CGCG	2 cut(s)	90, 231
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	2 cut(s)	22, 69
NlaIII	CATG	3 cut(s)	16, 70, 241
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	258, 273
PspGI	CCWGG	2 cut(s)	258, 273
PstI	CTGCAG	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	98, 255
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	22, 69
ScrFI	CCNGG	2 cut(s)	260, 275
SetI	ASST	6 cut(s)	54, 81, 188, 245, 255, 268
SfaNI	GCATC	2 cut(s)	116, 216
SfcI	CTRYAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	258, 273
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	72, 120, 224
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	98, 255
Tru9I	TTAA	2 cut(s)	98, 255
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	171
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.