Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

13560570 .. 13564287

Gene Structure 3718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTGGTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGACTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGAAAATCGCAAGTTATACAATCTGGTGCAGGATCTGAAAGGAAATATAAGGGTGTACTGCCGAGTGCGTCCTCTGTTGCCTGGGCAAACAAATCGTTCCAATACTTTTGATCAAATAGATGATGGAAAAATTACAATTGTCACCCCTTCAAAATATGGCAAAGAGGGGCGGAAATCTTTCAGTTTCAACAAAGTATTTGGGCCATTATCAATGTCTGTATATTTGCTGATGGTTACAATGTCTGTATATTTGCTGATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

144

Amino Acids

16.67

Weight (kDa)

9.61

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	57 - 129	6e-13	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	132
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	210
AfaI	GTAC	2 cut(s)	92, 227
AgsI	TTSAA	6 cut(s)	11, 40, 106, 170, 321, 358
AjnI	CCWGG	2 cut(s)	93, 250
AlwI	GGATC	1 cut(s)	210
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	287, 394
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	2 cut(s)	95, 252
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	280
BfaI	CTAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	95, 252
BmgT120I	GGNCC	1 cut(s)	371
BmrFI	CCNGG	2 cut(s)	95, 252
BmsI	GCATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	95, 252
BseDI	CCNNGG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	202, 280
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	202, 280
Bst2UI	CCWGG	2 cut(s)	95, 252
BstKTI	GATC	2 cut(s)	205, 283
BstMBI	GATC	2 cut(s)	202, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	95, 252
BstSCI	CCNGG	2 cut(s)	93, 250
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	91, 226
CviAII	CATG	2 cut(s)	128, 140
CviJI	RGCY	2 cut(s)	137, 373
CviKI_1	RGCY	2 cut(s)	137, 373
CviQI	GTAC	2 cut(s)	91, 226
DpnI	GATC	2 cut(s)	204, 282
DpnII	GATC	2 cut(s)	202, 280
EciI	GGCGGA	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	93, 250
FaeI	CATG	2 cut(s)	131, 143
FatI	CATG	2 cut(s)	127, 139
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	373
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	131, 143
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	32, 150, 167
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	327
HpyCH4V	TGCA	4 cut(s)	121, 127, 143, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	131, 143
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	202, 280
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	310, 403
MalI	GATC	2 cut(s)	204, 282
MboI	GATC	2 cut(s)	202, 280
MboII	GAAGA	1 cut(s)	182
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	3 cut(s)	35, 300, 306
MnlI	CCTC	3 cut(s)	91, 252, 328
MroXI	GAANNNNTTC	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	95, 252
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	95, 252
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	2 cut(s)	202, 280
NlaIII	CATG	2 cut(s)	131, 143
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	93, 250
PspGI	CCWGG	2 cut(s)	93, 250
PspPI	GGNCC	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	92, 227
RsaNI	GTAC	2 cut(s)	91, 226
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	202, 280
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	95, 252
SetI	ASST	2 cut(s)	118, 126
SfaNI	GCATC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	35, 300, 306
SsiI	CCGC	1 cut(s)	340
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	93, 250
TasI	AATT	3 cut(s)	35, 300, 306
TatI	WGTACW	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	86, 101
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.