Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

17768455 .. 17769755

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTGAGTAAAGTAATGGAGGAGTTTACACCTTCCAAAGATAGCCCTGGCCCTGACTTTGAGTCTCCATCTCTTTCTGAACCTGGTTCTAGTGATATCAAGATATCTGCGACTCAAATAAAGAAGGATGATTGTTGCAATAAAACATATGACCATCAAGAGGGATCAAAAGGCCAATTTGTGAGACATAAAATGTTGGTTGAACAACAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGAAAATCGCAAGTTATACAATCTGGTGCAGGATCTGAAAGGAAATATAAGGGTGTACTGCCGAGTGCGTCCTCTGTTGCCTGGGCAAACAAATCGTTCCAATACTTTTGATCAAATAGATGATGGAAAAATTACAATTGTCACCCCTTCAAAATATGGCAAAGAGGGGCGGAAATCTTTCAGTTTCAACAAAGTATTTGGGCCATTATCAACCCAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

194

Amino Acids

22.01

Weight (kDa)

9.11

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	121 - 193	1.3e-12	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	324
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	2 cut(s)	172, 402
AfaI	GTAC	2 cut(s)	284, 419
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	6 cut(s)	203, 232, 298, 362, 513, 550
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	4 cut(s)	46, 82, 285, 442
Alw26I	GTCTC	2 cut(s)	69, 178
AlwI	GGATC	2 cut(s)	172, 402
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	3 cut(s)	49, 172, 563
ApeKI	GCWGC	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	539
AspA2I	CCTAGG	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	50, 563
AsuHPI	GGTGA	1 cut(s)	496
AvrII	CCTAGG	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	76, 162, 479
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	4 cut(s)	48, 84, 287, 444
BciVI	GTATCC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	69, 178
BfaI	CTAG	2 cut(s)	90, 305
BfuAI	ACCTGC	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	336
BlnI	CCTAGG	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	4 cut(s)	48, 84, 287, 444
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	50, 563
BmrFI	CCNGG	4 cut(s)	48, 84, 287, 444
BmsI	GCATC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	46, 304, 443, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseBI	CCWGG	4 cut(s)	48, 84, 287, 444
BseDI	CCNNGG	4 cut(s)	46, 304, 443, 577
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	3 cut(s)	51, 174, 565
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	69, 178
BsnI	GGCC	3 cut(s)	51, 174, 565
Bsp143I	GATC	3 cut(s)	164, 394, 472
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	3 cut(s)	51, 174, 565
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	172, 402
BssECI	CCNNGG	4 cut(s)	46, 304, 443, 577
BssMI	GATC	3 cut(s)	164, 394, 472
BssT1I	CCWWGG	2 cut(s)	304, 577
Bst2UI	CCWGG	4 cut(s)	48, 84, 287, 444
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	3 cut(s)	167, 397, 475
BstMAI	GTCTC	2 cut(s)	69, 178
BstMBI	GATC	3 cut(s)	164, 394, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	4 cut(s)	48, 84, 287, 444
BstSCI	CCNGG	4 cut(s)	46, 82, 285, 442
BstV1I	GCAGC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	51, 174, 565
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	50, 563
CseI	GACGC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	283, 418
CviAII	CATG	2 cut(s)	320, 332
CviJI	RGCY	6 cut(s)	45, 51, 174, 303, 329, 565
CviKI_1	RGCY	6 cut(s)	45, 51, 174, 303, 329, 565
CviQI	GTAC	2 cut(s)	283, 418
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	3 cut(s)	166, 396, 474
DpnII	GATC	3 cut(s)	164, 394, 472
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	304, 577
Eco32I	GATATC	2 cut(s)	97, 105
EcoRII	CCWGG	4 cut(s)	46, 82, 285, 442
EcoRV	GATATC	2 cut(s)	97, 105
EcoT14I	CCWWGG	2 cut(s)	304, 577
ErhI	CCWWGG	2 cut(s)	304, 577
FaeI	CATG	2 cut(s)	323, 335
FatI	CATG	2 cut(s)	319, 331
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	90, 305
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	51, 174, 565
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	323, 335
HinfI	GANTC	2 cut(s)	62, 112
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	27, 418
Hpy188I	TCNGA	2 cut(s)	79, 399
Hpy188III	TCNNGA	5 cut(s)	100, 158, 224, 342, 359
Hpy8I	GTNNAC	2 cut(s)	27, 418
HpyAV	CCTTC	3 cut(s)	42, 118, 519
HpyCH4V	TGCA	5 cut(s)	138, 313, 319, 335, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	323, 335
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	164, 394, 472
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	347
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	2 cut(s)	90, 305
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	166, 396, 474
MboI	GATC	3 cut(s)	164, 394, 472
MboII	GAAGA	1 cut(s)	374
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	4 cut(s)	176, 227, 492, 498
MlyI	GAGTC	2 cut(s)	71, 106
MnlI	CCTC	5 cut(s)	13, 154, 283, 444, 520
MroXI	GAANNNNTTC	1 cut(s)	539
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	4 cut(s)	48, 84, 287, 444
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	4 cut(s)	48, 84, 287, 444
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	3 cut(s)	164, 394, 472
NlaIII	CATG	2 cut(s)	323, 335
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	502
PaqCI	CACCTGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	2 cut(s)	70, 106
PpsI	GAGTC	2 cut(s)	70, 106
Psp6I	CCWGG	4 cut(s)	46, 82, 285, 442
PspGI	CCWGG	4 cut(s)	46, 82, 285, 442
PspPI	GGNCC	2 cut(s)	50, 563
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	2 cut(s)	284, 419
RsaNI	GTAC	2 cut(s)	283, 418
RseI	CAYNNNNRTG	1 cut(s)	318
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	164, 394, 472
Sau96I	GGNCC	2 cut(s)	50, 563
SchI	GAGTC	2 cut(s)	71, 106
ScrFI	CCNGG	4 cut(s)	48, 84, 287, 444
SetI	ASST	5 cut(s)	34, 85, 310, 318, 583
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	176, 227, 492, 498
SsiI	CCGC	1 cut(s)	532
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	90, 305
StyD4I	CCNGG	4 cut(s)	46, 82, 285, 442
StyI	CCWWGG	2 cut(s)	304, 577
TasI	AATT	4 cut(s)	176, 227, 492, 498
TatI	WGTACW	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	278, 293
XmaJI	CCTAGG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	2 cut(s)	90, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.