RLG00000003185

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
45370808 .. 45372681
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003185

Sequence Viewer

Length: 342 bp
ATGGAGATGGAATCGGTGACAGAATCGGCGATGGCGTTGAGGAAGGGTGCCGCCGGAGCCGAGCGAGATGTTGATGGGGTGATTCGATTGAAAGTTTTTGGTGGTGATGGGGTGCTGTGGCTGTTACGATACTTGGCTTTGGGAGGTGGTTCTCGGATCTGGTCTGGTTTAGATCAGGTCGAAATCTCACTGAGGAGGACTCACCATGGTTTGCTGGTTTGGGTTCTTTTTTCGGTGGTGGCAGGATGTATTGGCATGGCGTTTGGCTTCTGGCTCTCGAATCTTTCTTTTGCATGCTGTAGTGAGGGGAGGCGGACATGGTGCTGTAGGTCTGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.36

Weight (kDa)

8.38

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 2 cut(s) 51, 313
AclWI GGATC 1 cut(s) 164
AgsI TTSAA 1 cut(s) 91
AlwI GGATC 1 cut(s) 164
AsuHPI GGTGA 4 cut(s) 28, 91, 116, 194
BanI GGYRCC 1 cut(s) 47
BccI CCATC 3 cut(s) 25, 68, 101
BfmI CTRYAG 2 cut(s) 298, 325
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 49, 58
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BsaJI CCNNGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 54
Bsp143I GATC 2 cut(s) 156, 172
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 2 cut(s) 51, 313
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 49, 58
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 156, 172
BssT1I CCWWGG 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 2 cut(s) 159, 175
BstMBI GATC 2 cut(s) 156, 172
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 298, 325
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 205
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 295
CviAII CATG 4 cut(s) 206, 256, 294, 318
CviJI RGCY 5 cut(s) 59, 121, 137, 267, 274
CviKI_1 RGCY 5 cut(s) 59, 121, 137, 267, 274
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 158, 174
DpnII GATC 2 cut(s) 156, 172
EciI GGCGGA 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 4 cut(s) 209, 259, 297, 321
FaiI YATR 4 cut(s) 207, 257, 295, 319
FatI CATG 4 cut(s) 205, 255, 293, 317
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HapII CCGG 1 cut(s) 54
Hin1II CATG 4 cut(s) 209, 259, 297, 321
HinfI GANTC 5 cut(s) 11, 23, 82, 199, 280
HpaII CCGG 1 cut(s) 54
HphI GGTGA 4 cut(s) 28, 91, 116, 194
Hpy188I TCNGA 2 cut(s) 156, 341
Hpy188III TCNNGA 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 4 cut(s) 209, 259, 297, 321
Kzo9I GATC 2 cut(s) 156, 172
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 67, 145, 150, 161, 200, 228, 256, 318
MaeIII GTNAC 2 cut(s) 16, 123
MalI GATC 2 cut(s) 158, 174
MboI GATC 2 cut(s) 156, 172
MflI RGATCY 1 cut(s) 156
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 6 cut(s) 33, 137, 186, 189, 298, 303
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 56
NcoI CCATGG 1 cut(s) 205
NdeII GATC 2 cut(s) 156, 172
NlaIII CATG 4 cut(s) 209, 259, 297, 321
NlaIV GGNNCC 2 cut(s) 49, 58
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 4 cut(s) 11, 23, 82, 280
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 49, 58
PsuI RGATCY 1 cut(s) 156
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 156, 172
SchI GAGTC 1 cut(s) 193
SetI ASST 3 cut(s) 148, 180, 332
SfcI CTRYAG 2 cut(s) 298, 325
SphI GCATGC 1 cut(s) 297
SsiI CCGC 2 cut(s) 51, 313
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 3 cut(s) 85, 180, 278
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 4 cut(s) 11, 23, 82, 280
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 195
XceI RCATGY 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.