Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

54021503 .. 54025073

Gene Structure 3571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATCAAAACCCAGACGAGCAAGACGATCGCCCTCAAAGTTTGGAACCCAGAAACATCGTATCCTTCGATTTGTGTTGGGCTGTTAGCCATCTGCGATTTGGTTGATGCAGCCCCGTCTTCGACCTCCGTCAATGGTAAATTCTTTGCTGTTAAATTTTTGATCTTGATTAAAGGTGACTTGAGGAACCCTTTTGTAGAGCAAGCAGTGCAGTACTGTGTGGCTGCTGCTCGAGCAACACTTGACAAAGACAAGAAGGATTCGTTAGAGAAATTACTATTGCAAGGAAACGCAACACCCTGTAACAAAATAAAGTTGACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTAACTCTGTGCCTATTCCTGACGGGGCAGCTCTATCAGCATTTCAGTACTTCGAAAACGTCAAAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAACCTCTGATTTGGAACAGGTTTCAGCTAGAGCAAATGGAGCAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

184

Amino Acids

19.77

Weight (kDa)

7.51

Isoelectric Point (pI)

17.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	140, 155, 457
AfaI	GTAC	2 cut(s)	215, 440
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	383, 500
AluBI	AGCT	2 cut(s)	422, 527
AluI	AGCT	2 cut(s)	422, 527
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	5 cut(s)	110, 224, 227, 419, 542
ApoI	RAATTY	3 cut(s)	140, 155, 457
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	122, 211, 214, 431
BccI	CCATC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciVI	GTATCC	1 cut(s)	72
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	111, 225, 228, 420, 543
BlsI	GCNGC	5 cut(s)	112, 226, 229, 421, 544
BmcAI	AGTACT	2 cut(s)	215, 440
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	47, 188
BmsI	GCATC	1 cut(s)	97
BoxI	GACNNNNGTC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	122, 211, 214, 431
BsgI	GTGCAG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	3, 27, 162
BspANI	GGCC	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	47, 188
BspT104I	TTCGAA	1 cut(s)	444
BssMI	GATC	3 cut(s)	3, 27, 162
Bst4CI	ACNGT	2 cut(s)	218, 365
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	204
BstKTI	GATC	3 cut(s)	6, 30, 165
BstMBI	GATC	3 cut(s)	3, 27, 162
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 233, 428, 539
BstNSI	RCATGY	1 cut(s)	329
BstPAI	GACNNNNGTC	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	122, 211, 214, 431
BstV2I	GAAGAC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 370
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	214, 439
CviAII	CATG	1 cut(s)	326
CviQI	GTAC	2 cut(s)	214, 439
DpnI	GATC	3 cut(s)	5, 29, 164
DpnII	GATC	3 cut(s)	3, 27, 162
Eco88I	CYCGRG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	386
FaeI	CATG	1 cut(s)	329
FaiI	YATR	3 cut(s)	327, 338, 340
FatI	CATG	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	111, 225, 228, 420, 543
Fsp4HI	GCNGC	5 cut(s)	111, 225, 228, 420, 543
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	5 cut(s)	111, 225, 228, 420, 543
HaeIII	GGCC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	260, 352
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	2 cut(s)	166, 410
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	3 cut(s)	75, 250, 377
HpyCH4III	ACNGT	2 cut(s)	218, 365
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	110, 211, 283, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 233, 428, 539
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 27, 162
LmnI	GCTCC	1 cut(s)	539
LpnPI	CCDG	6 cut(s)	26, 63, 313, 372, 423, 503
Lsp1109I	GCAGC	4 cut(s)	122, 211, 214, 431
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	3 cut(s)	176, 302, 392
MalI	GATC	3 cut(s)	5, 29, 164
MboI	GATC	3 cut(s)	3, 27, 162
MboII	GAAGA	1 cut(s)	111
MluCI	AATT	5 cut(s)	140, 155, 272, 457, 479
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	5 cut(s)	44, 136, 177, 469, 514
MseI	TTAA	2 cut(s)	153, 171
MslI	CAYNNNNRTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	208, 233, 428, 539
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	3 cut(s)	3, 27, 162
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	2 cut(s)	47, 188
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	231
PciI	ACATGT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 65
PfeI	GAWTC	2 cut(s)	260, 352
PkrI	GCNGC	5 cut(s)	112, 226, 229, 421, 544
Ple19I	CGATCG	1 cut(s)	30
PscI	ACATGT	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	47, 188
PspPI	GGNCC	1 cut(s)	386
PspXI	VCTCGAGB	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	2 cut(s)	215, 440
RsaNI	GTAC	2 cut(s)	214, 439
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	153, 171
SatI	GCNGC	5 cut(s)	111, 225, 228, 420, 543
Sau3AI	GATC	3 cut(s)	3, 27, 162
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	2 cut(s)	215, 440
SetI	ASST	8 cut(s)	128, 178, 424, 453, 497, 506, 522, 529
SfaNI	GCATC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	181, 231
SmoI	CTYRAG	2 cut(s)	181, 231
Sse9I	AATT	5 cut(s)	140, 155, 272, 457, 479
SspMI	CTAG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	218, 365
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	68, 122, 232, 444
TasI	AATT	5 cut(s)	140, 155, 272, 457, 479
TatI	WGTACW	2 cut(s)	213, 438
TfiI	GAWTC	2 cut(s)	260, 352
Tru1I	TTAA	2 cut(s)	153, 171
Tru9I	TTAA	2 cut(s)	153, 171
TscAI	CASTG	2 cut(s)	213, 370
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	5 cut(s)	110, 224, 227, 419, 542
Tsp45I	GTSAC	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	213, 370
XapI	RAATTY	3 cut(s)	140, 155, 457
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	231
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	2 cut(s)	215, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.