Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

77224680 .. 77242665

Gene Structure 17986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG554800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAGATAGAGTTCAAGTTGATTGTGGAATCTATGCTGAGTAAAGTAATGGAGGAGTTTCAGCATCGGCTAGCAAGCCAAACTGAACTGGTCATTGAGGATGATAAGCGTTTTCACATACAGGTCTACCTCGACTTTGGCTTGGCTATACCCAAGCTCAGTGTCCAAGGGATGGTATCTTCACCAAAAAGAACTTTTGGAGCTTGCTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

71

Amino Acids

8.15

Weight (kDa)

5.57

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	16
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	157, 203
AluI	AGCT	2 cut(s)	157, 203
AsuHPI	GGTGA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	106, 177
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	29, 172
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	30, 171
BspOI	GCTAGC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	72, 76, 205
BstDEI	CTNAG	2 cut(s)	38, 158
BstF5I	GGATG	2 cut(s)	106, 177
BtsCI	GGATG	2 cut(s)	106, 177
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	72, 76, 205
CviJI	RGCY	6 cut(s)	70, 78, 141, 146, 157, 203
CviKI_1	RGCY	6 cut(s)	70, 78, 141, 146, 157, 203
DdeI	CTNAG	2 cut(s)	38, 158
Eco130I	CCWWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaiI	YATR	3 cut(s)	35, 119, 149
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	2 cut(s)	113, 184
FspBI	CTAG	1 cut(s)	71
HinfI	GANTC	1 cut(s)	29
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	38, 158
LmnI	GCTCC	2 cut(s)	200, 212
LpnPI	CCDG	2 cut(s)	74, 107
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	71
MboII	GAAGA	1 cut(s)	171
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	3 cut(s)	46, 91, 140
MseI	TTAA	1 cut(s)	214
NheI	GCTAGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	214
SetI	ASST	4 cut(s)	126, 132, 159, 205
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	9 cut(s)	28, 83, 87, 101, 134, 143, 154, 166, 179
Sse9I	AATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	166
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TscAI	CASTG	1 cut(s)	166
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.