Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

6116624 .. 6118428

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGATAAACAGTTGCTTGACAGTTCATGTTCACGGAAGGGATCTGGCATCTGGAAGTATTCTTCGTGGTTGTATGCATCTAGTTGACTTAGCAGGAAGCGAAAGAGTTGATAAATCCGAGGTGACTGGTGATAGATTAAAGGAGGCACAACATATTAACAAATCTCTCTCAGCTTTAGGAGATGTCATTGCCTCTCTTGCTCAAAAGAATTCACACGTTCCGTATAGAAATAGTAAACTCACACAACTACTCCAAGACTCACTTGGAGGGCAAGCAAAGACACTCATGTTTGTTCACATTAGTCCTGAGTATGAAGCTCTTGGAGAAACATTGAGTACCCTCAAATTTGCAGAACGGGTTTCCACAGTTGAACTTGGTGCTGCTCGAGTCAACAAAGATGGGGCAAATGTTAAAGAGCTGAAAGAACAGATTGCTACTCTGAAGGCAGCCTTAGCACGAAAAGAAGGTGAGGGAATGCAGTTGAAAAATTCGCACTCCCTAAGCCCTGAAAGATTTAGAATGAATTCTGCTGGCTCTTCGCCTATGCATCCAAGAGGGAAAAGTACTGGAGATTTTTCCGGTGGTCGTAAGCAACCAACGGAGGATTTTGGAAATATAGAGGCTCGTAAAACCTCTACATCAAAGCCAAAAAGGCGAAGTTTGGATCTTCAAGACATGTTGATGCATTCACCTTCATGGCCACCGGTTGGTAGTCCCAAAGTGAATGGAAAGGAGGATGATAAGGAGTTATTTTCATCAATTCCCGGTGATTGGGTTGATAAGGTGATGGTGAACAAGCTTGAGAGTAAAAGTAGAGAACAAAGTCCATTAAGATCATGTTGGGATCATGTGGACAACAGACAGCTACCAGAGATGTTTGGTCAGAGTAGCCTTTCACACCCTTCCATTATATGTTCAACGACAAATAAGGACGAGAGTCAAGACTTTGACGAATCTGATGATCAACTTGATGCTGCAACTAGTGATTCTTCAGAGCCAGACGCGCTTTGGCAACTAAATGCTCCTATTAAAGCTACAAACATTCCAAATGGGTTGGGAGCAAAACCAAAGAAAACCAACTGCAGGCCGGTAAGGAGCCCAGAAACTAGAAGTTTCATTCCATCACTAATTCCTTCACCGTCGCGAAAACCACCCAATGGTGTTAGTCAAGCTTTGCCTAAGAGGCATTCAGTTTCTGCTGAAGGCAAGCGAAGGTATGGGAGTGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

410

Amino Acids

44.82

Weight (kDa)

9.12

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	5 - 122	1.2e-44	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	707, 1157
AccII	CGCG	2 cut(s)	1004, 1144
AclWI	GGATC	3 cut(s)	48, 672, 852
AcoI	YGGCCR	1 cut(s)	698
AcsI	RAATTY	4 cut(s)	208, 344, 487, 523
AcuI	CTGAAG	3 cut(s)	461, 975, 1221
AfaI	GTAC	2 cut(s)	337, 565
AfiI	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
AflIII	ACRYGT	2 cut(s)	214, 675
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	4 cut(s)	371, 484, 671, 918
AhlI	ACTAGT	1 cut(s)	980
AluBI	AGCT	7 cut(s)	173, 317, 418, 799, 865, 1034, 1172
AluI	AGCT	7 cut(s)	173, 317, 418, 799, 865, 1034, 1172
AlwI	GGATC	3 cut(s)	48, 672, 852
AlwNI	CAGNNNCTG	1 cut(s)	1196
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	698, 1085
ApeKI	GCWGC	3 cut(s)	380, 446, 974
ApoI	RAATTY	4 cut(s)	208, 344, 487, 523
AsiGI	ACCGGT	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	1006
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	8 cut(s)	133, 140, 479, 681, 779, 796, 802, 1128
AvaI	CYCGRG	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	1100
BbvI	GCAGC	3 cut(s)	367, 458, 961
BccI	CCATC	3 cut(s)	392, 781, 1129
BclI	TGATCA	1 cut(s)	961
BcnI	CCSGG	1 cut(s)	765
BcuI	ACTAGT	1 cut(s)	980
BfaI	CTAG	3 cut(s)	80, 981, 1107
BfmI	CTRYAG	1 cut(s)	1081
BglI	GCCNNNNNGGC	2 cut(s)	652, 1183
BisI	GCNGC	3 cut(s)	381, 447, 975
BlsI	GCNGC	3 cut(s)	382, 448, 976
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	765
BmeT110I	CYCGRG	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	1097
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	5 cut(s)	56, 85, 556, 672, 961
BoxI	GACNNNNGTC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	2 cut(s)	451, 500
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	2 cut(s)	578, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
Bse118I	RCCGGY	2 cut(s)	703, 1087
Bse1I	ACTGG	2 cut(s)	130, 571
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	547, 742
BseLI	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	183, 297
BseNI	ACTGG	2 cut(s)	130, 571
BseXI	GCAGC	3 cut(s)	367, 458, 961
Bsh1236I	CGCG	2 cut(s)	1004, 1144
BshFI	GGCC	2 cut(s)	700, 1087
BshTI	ACCGGT	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	4 cut(s)	579, 704, 765, 1088
BslFI	GGGAC	1 cut(s)	699
BslI	CCNNNNNNNGG	4 cut(s)	707, 771, 1083, 1157
BsmFI	GGGAC	1 cut(s)	699
BsmI	GAATGC	3 cut(s)	480, 685, 1186
BsnI	GGCC	2 cut(s)	700, 1087
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	1100
Bsp143I	GATC	5 cut(s)	40, 664, 833, 844, 961
Bsp68I	TCGCGA	1 cut(s)	1144
BspANI	GGCC	2 cut(s)	700, 1087
BspCNI	CTCAG	2 cut(s)	182, 298
BspFNI	CGCG	2 cut(s)	1004, 1144
BspLI	GGNNCC	1 cut(s)	1097
BspMAI	CTGCAG	1 cut(s)	1085
BspPI	GGATC	3 cut(s)	48, 672, 852
BspQI	GCTCTTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	2 cut(s)	703, 1087
BsrI	ACTGG	2 cut(s)	130, 571
BssAI	RCCGGY	2 cut(s)	703, 1087
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	5 cut(s)	40, 664, 833, 844, 961
Bst4CI	ACNGT	4 cut(s)	11, 22, 367, 1140
Bst6I	CTCTTC	1 cut(s)	541
BstC8I	GCNNGC	4 cut(s)	273, 532, 1085, 1208
BstDEI	CTNAG	6 cut(s)	88, 169, 306, 451, 500, 1179
BstF5I	GGATG	2 cut(s)	547, 742
BstFNI	CGCG	2 cut(s)	1004, 1144
BstHHI	GCGC	1 cut(s)	1006
BstKTI	GATC	5 cut(s)	43, 667, 836, 847, 964
BstMBI	GATC	5 cut(s)	40, 664, 833, 844, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 452, 652, 1003, 1183
BstNSI	RCATGY	1 cut(s)	679
BstPAI	GACNNNNGTC	1 cut(s)	936
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	1081
BstUI	CGCG	2 cut(s)	1004, 1144
BstV1I	GCAGC	3 cut(s)	367, 458, 961
BstX2I	RGATCY	2 cut(s)	40, 664
BstYI	RGATCY	2 cut(s)	40, 664
BsuRI	GGCC	2 cut(s)	700, 1087
BtsCI	GGATG	2 cut(s)	547, 742
BtuMI	TCGCGA	1 cut(s)	1144
Cac8I	GCNNGC	4 cut(s)	273, 532, 1085, 1208
CaiI	CAGNNNCTG	1 cut(s)	1196
CfoI	GCGC	1 cut(s)	1006
Cfr10I	RCCGGY	2 cut(s)	703, 1087
CseI	GACGC	1 cut(s)	1010
Csp6I	GTAC	2 cut(s)	336, 564
CspAI	ACCGGT	1 cut(s)	703
CviAII	CATG	6 cut(s)	26, 286, 676, 696, 837, 848
CviQI	GTAC	2 cut(s)	336, 564
DdeI	CTNAG	6 cut(s)	88, 169, 306, 451, 500, 1179
DpnI	GATC	5 cut(s)	42, 666, 835, 846, 963
DpnII	GATC	5 cut(s)	40, 664, 833, 844, 961
EaeI	YGGCCR	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	1100
Eco57I	CTGAAG	3 cut(s)	461, 975, 1221
Eco88I	CYCGRG	1 cut(s)	384
EcoRI	GAATTC	2 cut(s)	208, 523
EcoT22I	ATGCAT	3 cut(s)	78, 549, 687
EcoT38I	GRGCYC	1 cut(s)	1100
FaeI	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
FalI	AAGNNNNNCTT	4 cut(s)	246, 278, 434, 466
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	6 cut(s)	25, 285, 675, 695, 836, 847
FbaI	TGATCA	1 cut(s)	961
Fnu4HI	GCNGC	3 cut(s)	381, 447, 975
FokI	GGATG	2 cut(s)	534, 749
FriOI	GRGCYC	1 cut(s)	1100
Fsp4HI	GCNGC	3 cut(s)	381, 447, 975
FspBI	CTAG	3 cut(s)	80, 981, 1107
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	3 cut(s)	381, 447, 975
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	700, 1087
HapII	CCGG	4 cut(s)	579, 704, 765, 1088
HgaI	GACGC	1 cut(s)	1010
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HincII	GTYRAC	2 cut(s)	85, 391
HindII	GTYRAC	2 cut(s)	85, 391
HindIII	AAGCTT	2 cut(s)	797, 1170
HinfI	GANTC	5 cut(s)	257, 387, 937, 953, 986
HpaII	CCGG	4 cut(s)	579, 704, 765, 1088
HphI	GGTGA	8 cut(s)	133, 140, 479, 681, 779, 796, 802, 1128
Hpy166II	GTNNAC	7 cut(s)	31, 85, 236, 295, 391, 793, 853
Hpy188I	TCNGA	5 cut(s)	118, 441, 885, 958, 994
Hpy188III	TCNNGA	5 cut(s)	51, 305, 671, 941, 1143
Hpy8I	GTNNAC	7 cut(s)	31, 85, 236, 295, 391, 793, 853
Hpy99I	CGWCG	1 cut(s)	1144
HpyAV	CCTTC	8 cut(s)	30, 436, 458, 702, 912, 1143, 1196, 1206
HpyCH4III	ACNGT	4 cut(s)	11, 22, 367, 1140
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	8 cut(s)	76, 350, 478, 547, 685, 977, 1083, 1226
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 452, 652, 1003, 1183
HpyF3I	CTNAG	6 cut(s)	88, 169, 306, 451, 500, 1179
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
HspAI	GCGC	1 cut(s)	1004
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	40, 664, 833, 844, 961
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	1027, 1058, 1095
Lsp1109I	GCAGC	3 cut(s)	367, 458, 961
LweI	GCATC	5 cut(s)	56, 85, 556, 672, 961
MaeI	CTAG	3 cut(s)	80, 981, 1107
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	5 cut(s)	42, 666, 835, 846, 963
MboI	GATC	5 cut(s)	40, 664, 833, 844, 961
MboII	GAAGA	4 cut(s)	53, 528, 659, 981
MflI	RGATCY	2 cut(s)	40, 664
MhlI	GDGCHC	1 cut(s)	1100
MlsI	TGGCCA	1 cut(s)	700
MluCI	AATT	6 cut(s)	208, 344, 487, 523, 759, 1128
MluNI	TGGCCA	1 cut(s)	700
MlyI	GAGTC	3 cut(s)	251, 396, 946
Mox20I	TGGCCA	1 cut(s)	700
Mph1103I	ATGCAT	3 cut(s)	78, 549, 687
MroXI	GAANNNNTTC	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	700
MseI	TTAA	5 cut(s)	137, 156, 411, 830, 1029
MslI	CAYNNNNRTG	2 cut(s)	680, 694
Msp20I	TGGCCA	1 cut(s)	700
MspI	CCGG	4 cut(s)	579, 704, 765, 1088
MspR9I	CCNGG	1 cut(s)	765
Mva1269I	GAATGC	3 cut(s)	480, 685, 1186
MvnI	CGCG	2 cut(s)	1004, 1144
MwoI	GCNNNNNNNGC	5 cut(s)	197, 452, 652, 1003, 1183
NciI	CCSGG	1 cut(s)	765
NdeII	GATC	5 cut(s)	40, 664, 833, 844, 961
NlaIII	CATG	6 cut(s)	29, 289, 679, 699, 840, 851
NlaIV	GGNNCC	1 cut(s)	1097
NmuCI	GTSAC	1 cut(s)	121
NruI	TCGCGA	1 cut(s)	1144
NsiI	ATGCAT	3 cut(s)	78, 549, 687
NspI	RCATGY	1 cut(s)	679
PaeR7I	CTCGAG	1 cut(s)	384
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	541
PctI	GAATGC	3 cut(s)	480, 685, 1186
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	2 cut(s)	953, 986
PflMI	CCANNNNNTGG	2 cut(s)	707, 1157
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	382, 448, 976
PleI	GAGTC	3 cut(s)	251, 395, 945
PpsI	GAGTC	3 cut(s)	251, 395, 945
PscI	ACATGT	1 cut(s)	675
PshAI	GACNNNNGTC	1 cut(s)	936
PspN4I	GGNNCC	1 cut(s)	1097
PspXI	VCTCGAGB	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	1085
PstNI	CAGNNNCTG	1 cut(s)	1196
PsuI	RGATCY	2 cut(s)	40, 664
RruI	TCGCGA	1 cut(s)	1144
RsaI	GTAC	2 cut(s)	337, 565
RsaNI	GTAC	2 cut(s)	336, 564
RseI	CAYNNNNRTG	2 cut(s)	680, 694
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	5 cut(s)	137, 156, 411, 830, 1029
SatI	GCNGC	3 cut(s)	381, 447, 975
Sau3AI	GATC	5 cut(s)	40, 664, 833, 844, 961
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	3 cut(s)	251, 396, 946
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	1100
SfaNI	GCATC	5 cut(s)	56, 85, 556, 672, 961
SfcI	CTRYAG	1 cut(s)	1081
Sfr274I	CTCGAG	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	680, 694
SmlI	CTYRAG	2 cut(s)	384, 800
SmoI	CTYRAG	2 cut(s)	384, 800
SpeI	ACTAGT	1 cut(s)	980
Sse9I	AATT	6 cut(s)	208, 344, 487, 523, 759, 1128
SspMI	CTAG	3 cut(s)	80, 981, 1107
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	4 cut(s)	11, 22, 367, 1140
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	385
TasI	AATT	6 cut(s)	208, 344, 487, 523, 759, 1128
TatI	WGTACW	1 cut(s)	563
TfiI	GAWTC	2 cut(s)	953, 986
Tru1I	TTAA	5 cut(s)	137, 156, 411, 830, 1029
Tru9I	TTAA	5 cut(s)	137, 156, 411, 830, 1029
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	380, 446, 974
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	6 cut(s)	14, 327, 536, 684, 744, 1105
TspGWI	ACGGA	3 cut(s)	48, 210, 614
Van91I	CCANNNNNTGG	2 cut(s)	707, 1157
XapI	RAATTY	4 cut(s)	208, 344, 487, 523
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	260, 1005
XhoI	CTCGAG	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	3 cut(s)	80, 981, 1107
ZrmI	AGTACT	1 cut(s)	565
Zsp2I	ATGCAT	3 cut(s)	78, 549, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.