Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

69417905 .. 69421143

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGCAACAAGCTTTGTCCTCACTGTGTTTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGTCCAGTACAAGGCCATTAAATTGGACCAAGAGATGTCTGTCTATATGCTTCAAACTAAGTTGACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTGACTCTGTGCCTATTCCTAATGGGGCAGCTCTATCAGCATTTCAGTACTTTGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGCTCGGCCCTTGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

131

Amino Acids

14.54

Weight (kDa)

6.7

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	2 cut(s)	122, 299
AfiI	CCNNNNNNNGG	2 cut(s)	124, 224
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	167, 242, 305, 359
AluBI	AGCT	5 cut(s)	25, 64, 94, 281, 379
AluI	AGCT	5 cut(s)	25, 64, 94, 281, 379
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	3 cut(s)	126, 244, 382
ApeKI	GCWGC	2 cut(s)	91, 278
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	139, 245, 383
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	103, 290
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	92, 279
BlsI	GCNGC	2 cut(s)	93, 280
BmcAI	AGTACT	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	139, 245, 383
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BsaJI	CCNNGG	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 224
Bse1I	ACTGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	386
BseLI	CCNNNNNNNGG	2 cut(s)	124, 224
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	103, 290
BshFI	GGCC	3 cut(s)	128, 246, 384
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	124, 224
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	128, 246, 384
Bsp1286I	GDGCHC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	128, 246, 384
BspQI	GCTCTTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	77, 224
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	103, 290
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	128, 246, 384
BtsIMutI	CAGTG	2 cut(s)	73, 229
Cfr13I	GGNCC	3 cut(s)	139, 245, 383
Csp6I	GTAC	2 cut(s)	121, 298
CviAII	CATG	1 cut(s)	185
CviQI	GTAC	2 cut(s)	121, 298
DdeI	CTNAG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	188
FaiI	YATR	6 cut(s)	159, 161, 186, 197, 199, 394
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	1 cut(s)	184
FauNDI	CATATG	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	92, 279
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	92, 279
GluI	GCNGC	2 cut(s)	92, 279
HaeIII	GGCC	3 cut(s)	128, 246, 384
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	114, 211, 254
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	314, 367
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	13, 236
HpyCH4III	ACNGT	2 cut(s)	77, 224
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	188
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	54, 131, 231
Lsp1109I	GCAGC	2 cut(s)	103, 290
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	43, 88
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	107, 134, 316, 338
MlyI	GAGTC	2 cut(s)	123, 248
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	3 cut(s)	81, 328, 373
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeI	CATATG	1 cut(s)	197
NlaIII	CATG	1 cut(s)	188
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	188
PciI	ACATGT	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	93, 280
PleI	GAGTC	2 cut(s)	122, 248
PpsI	GAGTC	2 cut(s)	122, 248
PscI	ACATGT	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	27
PspPI	GGNCC	3 cut(s)	139, 245, 383
RsaI	GTAC	2 cut(s)	122, 299
RsaNI	GTAC	2 cut(s)	121, 298
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	92, 279
Sau96I	GGNCC	3 cut(s)	139, 245, 383
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	2 cut(s)	123, 248
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	8 cut(s)	18, 27, 66, 96, 283, 312, 356, 381
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	4 cut(s)	107, 134, 316, 338
SstI	GAGCTC	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	77, 224
TaiI	ACGT	1 cut(s)	312
TasI	AATT	4 cut(s)	107, 134, 316, 338
TatI	WGTACW	2 cut(s)	120, 297
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	80, 229
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	91, 278
Tsp45I	GTSAC	1 cut(s)	251
TspRI	CASTG	2 cut(s)	80, 229
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.