Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Forward (+)

49381391 .. 49384696

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGCAACAAGCTTTGTCCTCACTGTGTTTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGTCCAGTACAAGGCCATTAAATTGGACCAAGAGAGTCAGTACCCACTCTTCTCCTTTCAAATTCTGTCTGTCTATATGCTTCAAACTAAGTTGACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTGACTCTGTGCCTATTCCTAATGGGGCAGCTCTATCAGCATTTCAGTACTTTGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTCTGATTTGGAACAGATGGTTTCAACAATGAAGAAGTCGATCTTTGATGAACAAACTAACAAGGCCTTAAGGAAATTGCAAAAGAATGCTCAAAAGAAGAGAAGGCATCATGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

182

Amino Acids

20.7

Weight (kDa)

9.12

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	174, 346
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	122, 155, 329
AfiI	CCNNNNNNNGG	2 cut(s)	124, 254
AflII	CTTAAG	1 cut(s)	460
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	173, 197, 272, 335, 389, 417
AluBI	AGCT	5 cut(s)	25, 64, 94, 311, 518
AluI	AGCT	5 cut(s)	25, 64, 94, 311, 518
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	3 cut(s)	126, 274, 456
ApeKI	GCWGC	2 cut(s)	91, 308
ApoI	RAATTY	2 cut(s)	174, 346
AspS9I	GGNCC	2 cut(s)	139, 275
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	103, 320
BccI	CCATC	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	34
BfrI	CTTAAG	1 cut(s)	460
BisI	GCNGC	2 cut(s)	92, 309
BlsI	GCNGC	2 cut(s)	93, 310
BmcAI	AGTACT	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	139, 275
BmsI	GCATC	1 cut(s)	508
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 254
Bse1I	ACTGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	124, 254
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	103, 320
BshFI	GGCC	3 cut(s)	128, 276, 458
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	124, 254
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	128, 276, 458
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	432
BspANI	GGCC	3 cut(s)	128, 276, 458
BspHI	TCATGA	1 cut(s)	502
BspQI	GCTCTTC	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	77, 254, 543
Bst6I	CTCTTC	3 cut(s)	101, 167, 485
BstAFI	CTTAAG	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	435
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 524
BstNSI	RCATGY	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	103, 320
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	128, 276, 458
BtsIMutI	CAGTG	2 cut(s)	73, 259
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	139, 275
Csp6I	GTAC	3 cut(s)	121, 154, 328
CviAII	CATG	3 cut(s)	215, 503, 533
CviQI	GTAC	3 cut(s)	121, 154, 328
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
Eam1104I	CTCTTC	3 cut(s)	101, 167, 485
EarI	CTCTTC	3 cut(s)	101, 167, 485
Ecl136II	GAGCTC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	218, 506, 536
FaiI	YATR	8 cut(s)	189, 191, 216, 227, 229, 504, 534, 539
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 419, 451
FatI	CATG	3 cut(s)	214, 502, 532
FauNDI	CATATG	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	92, 309
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	92, 309
GluI	GCNGC	2 cut(s)	92, 309
HaeIII	GGCC	3 cut(s)	128, 276, 458
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	3 cut(s)	218, 506, 536
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	114, 148, 241, 284
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	344, 397
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	3 cut(s)	13, 266, 489
HpyCH4III	ACNGT	3 cut(s)	77, 254, 543
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	231, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 524
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	218, 506, 536
Kzo9I	GATC	1 cut(s)	432
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	3 cut(s)	54, 131, 261
Lsp1109I	GCAGC	2 cut(s)	103, 320
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	5 cut(s)	43, 88, 154, 436, 502
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	6 cut(s)	107, 134, 174, 346, 368, 467
MlyI	GAGTC	3 cut(s)	123, 157, 278
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	3 cut(s)	81, 358, 403
MseI	TTAA	2 cut(s)	132, 461
MslI	CAYNNNNRTG	2 cut(s)	219, 504
MspCI	CTTAAG	1 cut(s)	460
MspI	CCGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	317, 524
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	3 cut(s)	218, 506, 536
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	218
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	458
PciI	ACATGT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	93, 310
PleI	GAGTC	3 cut(s)	122, 156, 278
PpsI	GAGTC	3 cut(s)	122, 156, 278
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	139, 275
RsaI	GTAC	3 cut(s)	122, 155, 329
RsaNI	GTAC	3 cut(s)	121, 154, 328
RseI	CAYNNNNRTG	2 cut(s)	219, 504
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	132, 461
SatI	GCNGC	2 cut(s)	92, 309
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	2 cut(s)	139, 275
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	3 cut(s)	123, 157, 278
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	8 cut(s)	18, 27, 66, 96, 313, 342, 386, 520
SfaNI	GCATC	1 cut(s)	508
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	2 cut(s)	219, 504
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	6 cut(s)	107, 134, 174, 346, 368, 467
SseBI	AGGCCT	1 cut(s)	458
SstI	GAGCTC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	458
TaaI	ACNGT	3 cut(s)	77, 254, 543
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	431, 514
TasI	AATT	6 cut(s)	107, 134, 174, 346, 368, 467
TatI	WGTACW	2 cut(s)	120, 327
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	132, 461
Tru9I	TTAA	2 cut(s)	132, 461
TscAI	CASTG	2 cut(s)	80, 259
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	91, 308
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	437, 456
TspRI	CASTG	2 cut(s)	80, 259
Vha464I	CTTAAG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	174, 346
XceI	RCATGY	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.