Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001083

Physical Location & Seq

Genomic Coordinates Reverse (-)

64124834 .. 64126566

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0465400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTGGTATCTCAGTAGAACACCTTCAAACCGCAAACCAAATGATGACTCCAACTTCAGTTTGCGCAATTCCATCTTCACCGTCTCCGATTCCGGTTTTTTCCAAGACATTTGCATGATTGAGGTGCCAAACAAATCCGTGGTCGATCACGAAAAACACAACAAAGAAGAAGAGACGTGCCCATTTTCATTCTCATTCCCAAAATGGGAATGGTTTGCCTATCTCTGCTCTCCCACCCAATTCCATTCCGTGGCGGTGCCTCGAAACTCTTCCATGTTTAGAGTACATGTGATTGGGATTCTGCCTCAACATTTCTTGTGTGCCAAGTTGGTGCGAGGTCCGAAACCTTATGTCACTCTGTGCACTTACTCATGCAGTGAGAATTCTCTCAATGATGTGCCCAAAATGAACTGTGCGGATCGCAATCTGTTCGGAGCTGCATGTGCTATTCTTGATGGGTGGCTTTATGTTGCTGGAGGGTATAAGGATAACTCTTTAGATACTTTTCCTTCATCTCACTTGAACTCGGCAGAACGATTGAATCTGAAAACATGGCAGTGGGAAGCACTGCAGAACATGCCAAACCCGCGAGCATTTGCATCTGGCATTGCTCACGGAGGCAGGTTCTTTGTGGTTGGTGGTGGTAGCAATGCAGCCCTGAAGCACTCAGCTGAAATCTACAACCCCAGCAACAACTCTTGGGGGTCTTTGAAATCATTTGTTCCCCAAGAGGCAGACGGATTCACTGCTACATCACTCAATGGGCGTTTAATGATATTGACTTGGTCAGATCGGTTAGGCGTGAAGCTGTGGCTGTATACTGTGATCACCCGTCCAATTTTAATATATAACTGCAGGCGAATTGGTTTCTTGCCTAACCAAATAGTTGAGAGGCCAAGACTAAAAGCACATGGCGCAAGGATGGTTCCGGTTGGGGGGAAGGAGGTGTGGGTTTTGGTGGGAGAGAATGAGAGGATATTCCAAGTTGATGGGTCAAGTGCTTGGCCTGTGTTCCCAGCCCCAATGTATAAGCCTAGTGAAGGACATGAAGTTGTGAGCAAGGGTCATATCTATGCCTTTTCTTTCCAAGGGGTTAGAATAAGTTGGAGACAAATCCCTGTTTACTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

377

Amino Acids

42.51

Weight (kDa)

8.99

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Calicin	PF13964	122 - 237	2.8e-06	Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	136 - 259	4e-10	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1	PF01344	145 - 194	5.3e-08	Kelch motif
Beta-prop_FBX42	PF13415	146 - 321	1.8e-07	FBX42, beta-propeller domain
Kelch_1	PF01344	196 - 234	3.7e-06	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT1G09170 AT5G27000
fragaria_vesca	FvH4_2g14960 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070 FvH4_6g07070
malus_domestica	MD04G1196400.v1.1 MD12G1209400.v1.1
prunus_persica	Prupe.6G316600_v2.0.a1
pyrus_communis	pycom12g19670
rosa_chinensis	RchiOBHm_Chr1g0318271 RchiOBHm_Chr2g0102121 RchiOBHm_Chr2g0167941 RchiOBHm_Chr3g0456621 RchiOBHm_Chr3g0456641 RchiOBHm_Chr5g0067221
rosa_laevigata	RLG00000003185 RLG00000003285 RLG00000003859 RLG00000003890 RLG00000025287 RLG00000033013
rosa_multiflora	Rmu_sc0000133.1_g000037 Rmu_sc0000894.1_g000040 Rmu_sc0001563.1_g000026 Rmu_sc0007742.1_g000030 Rmu_sc0012002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120300 Rroxscaffold_2G00132430 Rroxscaffold_5G00367570 Rroxscaffold_6G00422580 Rroxscaffold_7G00200730
rosa_rugosa	Rorug03G0014400 Rorug05G0465400 Rorug05G0465500
rosa_samantha	Rh1AG324900 Rh1CG231300 Rh2AG394600 Rh3AG075200 Rh3BG077100 Rh3CG076700 Rh3CG076800 Rh3DG078700 Rh5BG530400 Rh5CG554800 Rh6AG058800
rosa_wichuraiana	Rw3G006440 Rw4G008320 Rw5G014820 Rw7G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	612
AccB1I	GGYRCC	2 cut(s)	124, 256
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	818
AccII	CGCG	1 cut(s)	589
AciI	CCGC	4 cut(s)	31, 254, 416, 587
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	2 cut(s)	40, 680
AdeI	CACNNNGTG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	205, 250, 935, 1040
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	27, 523, 541, 712
AjiI	CACGTC	1 cut(s)	177
AluBI	AGCT	3 cut(s)	437, 671, 808
AluI	AGCT	3 cut(s)	437, 671, 808
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	88, 167, 1102
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	426
AoxI	GGCC	2 cut(s)	893, 1004
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	437, 653
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
Asp700I	GAANNNNTTC	2 cut(s)	22, 268
AspLEI	GCGC	2 cut(s)	66, 917
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	70, 820
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	3 cut(s)	182, 365, 402
BanI	GGYRCC	2 cut(s)	124, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	424, 665
BccI	CCATC	4 cut(s)	80, 449, 916, 983
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	3 cut(s)	88, 167, 1102
BfaI	CTAG	1 cut(s)	1035
BfmI	CTRYAG	2 cut(s)	569, 853
BfuAI	ACCTGC	1 cut(s)	612
BisI	GCNGC	2 cut(s)	438, 654
BlsI	GCNGC	2 cut(s)	439, 655
Bme18I	GGWCC	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	3 cut(s)	126, 258, 927
BmsI	GCATC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	138, 249, 1087
BsaWI	WCCGGW	2 cut(s)	92, 928
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 250, 935, 1040
Bse3DI	GCAATG	2 cut(s)	606, 655
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	138, 249, 1087
BseGI	GGATG	1 cut(s)	927
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	205, 250, 935, 1040
BseMI	GCAATG	2 cut(s)	606, 655
BseMII	CTCAG	2 cut(s)	25, 681
BseSI	GKGCMC	3 cut(s)	182, 365, 402
BseXI	GCAGC	2 cut(s)	424, 665
BseYI	CCCAGC	2 cut(s)	686, 1015
Bsh1236I	CGCG	1 cut(s)	589
BshFI	GGCC	2 cut(s)	895, 1006
BshNI	GGYRCC	2 cut(s)	124, 256
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	93, 929
BslI	CCNNNNNNNGG	4 cut(s)	205, 250, 935, 1040
BsmAI	GTCTC	3 cut(s)	88, 167, 1102
BsmBI	CGTCTC	2 cut(s)	88, 167
BsnI	GGCC	2 cut(s)	895, 1006
Bsp1286I	GDGCHC	3 cut(s)	182, 365, 402
Bsp143I	GATC	4 cut(s)	145, 418, 790, 825
BspACI	CCGC	4 cut(s)	31, 254, 416, 587
BspANI	GGCC	2 cut(s)	895, 1006
BspCNI	CTCAG	2 cut(s)	24, 680
BspFNI	CGCG	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	126, 258, 927
BspMAI	CTGCAG	2 cut(s)	573, 857
BspMI	ACCTGC	1 cut(s)	612
BspPI	GGATC	1 cut(s)	426
BspT107I	GGYRCC	2 cut(s)	124, 256
BsrDI	GCAATG	2 cut(s)	606, 655
BssECI	CCNNGG	3 cut(s)	138, 249, 1087
BssMI	GATC	4 cut(s)	145, 418, 790, 825
BssNAI	GTATAC	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	1087
Bst1107I	GTATAC	1 cut(s)	819
Bst4CI	ACNGT	3 cut(s)	82, 413, 823
Bst6I	CTCTTC	2 cut(s)	165, 274
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	591, 857
BstDEI	CTNAG	3 cut(s)	11, 667, 1126
BstDSI	CCRYGG	2 cut(s)	138, 249
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstF5I	GGATG	1 cut(s)	927
BstFNI	CGCG	1 cut(s)	589
BstHHI	GCGC	2 cut(s)	66, 917
BstKTI	GATC	4 cut(s)	148, 421, 793, 828
BstMAI	GTCTC	3 cut(s)	88, 167, 1102
BstMBI	GATC	4 cut(s)	145, 418, 790, 825
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 577, 586, 914
BstNSI	RCATGY	3 cut(s)	290, 444, 580
BstSFI	CTRYAG	2 cut(s)	569, 853
BstSLI	GKGCMC	3 cut(s)	182, 365, 402
BstUI	CGCG	1 cut(s)	589
BstV1I	GCAGC	2 cut(s)	424, 665
BstXI	CCANNNNNNTGG	1 cut(s)	989
BstZ17I	GTATAC	1 cut(s)	819
BsuRI	GGCC	2 cut(s)	895, 1006
BtgI	CCRYGG	2 cut(s)	138, 249
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	927
BtsI	GCAGTG	4 cut(s)	382, 563, 566, 744
BtsIMutI	CAGTG	4 cut(s)	382, 563, 566, 744
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	2 cut(s)	591, 857
CfoI	GCGC	2 cut(s)	66, 917
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	9 cut(s)	115, 274, 287, 372, 441, 552, 577, 911, 1046
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	11, 667, 1126
DpnI	GATC	4 cut(s)	147, 420, 792, 827
DpnII	GATC	4 cut(s)	145, 418, 790, 825
DraIII	CACNNNGTG	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	165, 274
EarI	CTCTTC	2 cut(s)	165, 274
Eco130I	CCWWGG	1 cut(s)	1087
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	40, 680
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoRI	GAATTC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	1087
ErhI	CCWWGG	1 cut(s)	1087
Esp3I	CGTCTC	2 cut(s)	88, 167
FaeI	CATG	9 cut(s)	118, 277, 290, 375, 444, 555, 580, 914, 1049
FatI	CATG	9 cut(s)	114, 273, 286, 371, 440, 551, 576, 910, 1045
FauI	CCCGC	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	818
Fnu4HI	GCNGC	2 cut(s)	438, 654
FokI	GGATG	1 cut(s)	934
Fsp4HI	GCNGC	2 cut(s)	438, 654
FspBI	CTAG	1 cut(s)	1035
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	2 cut(s)	65, 916
GluI	GCNGC	2 cut(s)	438, 654
GsaI	CCCAGC	2 cut(s)	690, 1019
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	895, 1006
HapII	CCGG	2 cut(s)	93, 929
HhaI	GCGC	2 cut(s)	66, 917
Hin1II	CATG	9 cut(s)	118, 277, 290, 375, 444, 555, 580, 914, 1049
Hin6I	GCGC	2 cut(s)	64, 915
HinP1I	GCGC	2 cut(s)	64, 915
HinfI	GANTC	5 cut(s)	47, 89, 298, 541, 741
HpaII	CCGG	2 cut(s)	93, 929
HphI	GGTGA	2 cut(s)	70, 820
Hpy166II	GTNNAC	3 cut(s)	363, 819, 1123
Hpy188I	TCNGA	5 cut(s)	88, 342, 434, 546, 790
Hpy188III	TCNNGA	2 cut(s)	149, 452
Hpy8I	GTNNAC	3 cut(s)	363, 819, 1123
HpyAV	CCTTC	4 cut(s)	33, 519, 934, 1034
HpyCH4III	ACNGT	3 cut(s)	82, 413, 823
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	8 cut(s)	114, 363, 375, 440, 571, 599, 653, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 577, 586, 914
HpyF3I	CTNAG	3 cut(s)	11, 667, 1126
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	9 cut(s)	118, 277, 290, 375, 444, 555, 580, 914, 1049
HspAI	GCGC	2 cut(s)	64, 915
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	145, 418, 790, 825
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	2 cut(s)	424, 665
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	1 cut(s)	1035
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	4 cut(s)	147, 420, 792, 827
MboI	GATC	4 cut(s)	145, 418, 790, 825
MboII	GAAGA	4 cut(s)	67, 179, 182, 261
MhlI	GDGCHC	3 cut(s)	182, 365, 402
MluCI	AATT	5 cut(s)	67, 239, 382, 837, 861
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	2 cut(s)	75, 1085
MroXI	GAANNNNTTC	2 cut(s)	22, 268
MseI	TTAA	2 cut(s)	770, 842
MslI	CAYNNNNRTG	3 cut(s)	113, 556, 1071
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	2 cut(s)	93, 929
MvnI	CGCG	1 cut(s)	589
MwoI	GCNNNNNNNGC	4 cut(s)	443, 577, 586, 914
NdeII	GATC	4 cut(s)	145, 418, 790, 825
NlaIII	CATG	9 cut(s)	118, 277, 290, 375, 444, 555, 580, 914, 1049
NlaIV	GGNNCC	3 cut(s)	126, 258, 927
NmeAIII	GCCGAG	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	65
NspI	RCATGY	3 cut(s)	290, 444, 580
PciI	ACATGT	1 cut(s)	286
PdmI	GAANNNNTTC	2 cut(s)	22, 268
PfeI	GAWTC	4 cut(s)	89, 298, 541, 741
PflFI	GACNNNGTC	1 cut(s)	784
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	439, 655
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PscI	ACATGT	1 cut(s)	286
PspFI	CCCAGC	2 cut(s)	686, 1015
PspN4I	GGNNCC	3 cut(s)	126, 258, 927
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	2 cut(s)	573, 857
PsyI	GACNNNGTC	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	3 cut(s)	113, 556, 1071
SaqAI	TTAA	2 cut(s)	770, 842
SatI	GCNGC	2 cut(s)	438, 654
Sau3AI	GATC	4 cut(s)	145, 418, 790, 825
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	3 cut(s)	182, 365, 402
SfaNI	GCATC	1 cut(s)	608
SfcI	CTRYAG	2 cut(s)	569, 853
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	113, 556, 1071
Sse9I	AATT	5 cut(s)	67, 239, 382, 837, 861
SsiI	CCGC	4 cut(s)	31, 254, 416, 587
SspMI	CTAG	1 cut(s)	1035
StyI	CCWWGG	1 cut(s)	1087
TaaI	ACNGT	3 cut(s)	82, 413, 823
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	144, 262
TasI	AATT	5 cut(s)	67, 239, 382, 837, 861
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	4 cut(s)	89, 298, 541, 741
Tru1I	TTAA	2 cut(s)	770, 842
Tru9I	TTAA	2 cut(s)	770, 842
TscAI	CASTG	4 cut(s)	382, 563, 573, 751
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	437, 653
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	177, 422, 501, 1062
TspGWI	ACGGA	4 cut(s)	127, 238, 630, 753
TspRI	CASTG	4 cut(s)	382, 563, 573, 751
Tth111I	GACNNNGTC	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	338
XagI	CCTNNNNNAGG	1 cut(s)	1038
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	3 cut(s)	290, 444, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	818
XmnI	GAANNNNTTC	2 cut(s)	22, 268
XspI	CTAG	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.