Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

7820062 .. 7823006

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGAAGGCAGTTGCAGAAGTCAAAGTCTCATCAATCTTCATATACCCAGTAAAATCATGCCGTGGAATTTCAGTTTCTCAAGCTCCTGTCACTCCTACTGGTTTTCGATGGGATCGGCAATGGTTAGTAGTAAATTACAAAGGGAGGGCATATACTCAAAGAGTTGAGCCCAAGCTTGCTTTGGTTGAGGTACAGCTTCCAAATGAGGCATTTGTAGAGAATTGGGAACCTGCTGAAAGCTCTTATCTTGTATTAAAAGCACCCGGGATGGATGTGCTGAAGGTTTCGTTGAGCACACCAAAAGAAATAGCAGATGGGGTTTCAGTATGGGAGTGGTCTGGTGCTGCATTAGATGAGGGAGCTGATGCGTCGAAATGGTTTTCAGATTATCTAGGGAAACCTTGTCGACTTGTCCGCTTTAATGCAGCTTCAGAAACTAGGCCTGTAGAACCTGAATATGCTCCTGGACACCAAACAATGTTCTCCGATATGTATCCATACATGCTATTATCTCAGGAATCGCTGGATGCACTAAATGAGCTTCTGAAGGAACCCATACCAATTAACCGATTTAGACCCAACATTCTAGTCAATGGATGTGAACCATTTTCTGAGGACCTTTGGACAGAGATCAGAATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATTGATCAAAAAACTGGCATTGCAGGACCTGAGCCAAACGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACTAAAAAACAGCAAGGAAGGGTCTACTTCGGGCAGAATCTTGTTTGCAGAGACTCTCTTACAGGAGGAGGTGGGAAGGGACATGTCATAAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTATCTTCTGCTGAAGAAGCAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

310

Amino Acids

34.36

Weight (kDa)

6.77

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	9 - 135	3e-36	MOSC N-terminal beta barrel domain
MOSC	PF03473	159 - 295	2.3e-22	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
Acc65I	GGTACC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	688
AccI	GTMKAC	2 cut(s)	409, 801
AciI	CCGC	2 cut(s)	418, 679
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	3 cut(s)	302, 417, 569
AfaI	GTAC	2 cut(s)	195, 690
AfiI	CCNNNNNNNGG	2 cut(s)	685, 898
AflII	CTTAAG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	466
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	34, 822
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	4 cut(s)	347, 428, 920, 923
ApoI	RAATTY	1 cut(s)	69
Asp718I	GGTACC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	619, 722
AsuC2I	CCSGG	2 cut(s)	267, 268
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	619, 722
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	334, 440
BccI	CCATC	4 cut(s)	105, 265, 311, 892
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	2 cut(s)	267, 268
BcoDI	GTCTC	2 cut(s)	34, 822
BfaI	CTAG	3 cut(s)	395, 441, 590
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	507
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	4 cut(s)	348, 429, 921, 924
BlsI	GCNGC	4 cut(s)	349, 430, 922, 925
Bme1390I	CCNGG	3 cut(s)	267, 268, 468
Bme18I	GGWCC	2 cut(s)	619, 722
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	619, 722
BmiI	GGNNCC	3 cut(s)	231, 555, 690
BmrFI	CCNGG	3 cut(s)	267, 268, 468
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	3 cut(s)	358, 520, 751
BmuI	ACTGGG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	2 cut(s)	66, 878
BpuMI	CCSGG	2 cut(s)	267, 268
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	64, 266
BsaWI	WCCGGW	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	685, 898
Bse1I	ACTGG	3 cut(s)	50, 106, 715
Bse3DI	GCAATG	2 cut(s)	128, 714
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	64, 266
BseGI	GGATG	4 cut(s)	276, 280, 535, 605
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	685, 898
BseMI	GCAATG	2 cut(s)	128, 714
BseMII	CTCAG	3 cut(s)	530, 606, 717
BseNI	ACTGG	3 cut(s)	50, 106, 715
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	2 cut(s)	334, 440
BshFI	GGCC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	267, 754
BslFI	GGGAC	1 cut(s)	870
BslI	CCNNNNNNNGG	2 cut(s)	685, 898
BsmAI	GTCTC	2 cut(s)	34, 822
BsmFI	GGGAC	1 cut(s)	870
BsnI	GGCC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	174, 299
Bsp143I	GATC	4 cut(s)	115, 633, 700, 877
BspACI	CCGC	2 cut(s)	418, 679
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	3 cut(s)	529, 607, 718
BspLI	GGNNCC	3 cut(s)	231, 555, 690
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	688
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	128, 714
BsrI	ACTGG	3 cut(s)	50, 106, 715
BssECI	CCNNGG	2 cut(s)	64, 266
BssMI	GATC	4 cut(s)	115, 633, 700, 877
Bst2UI	CCWGG	1 cut(s)	468
BstAFI	CTTAAG	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	516, 615, 726
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	276, 280, 535, 605
BstKTI	GATC	4 cut(s)	118, 636, 703, 880
BstMAI	GTCTC	2 cut(s)	34, 822
BstMBI	GATC	4 cut(s)	115, 633, 700, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	917
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	2 cut(s)	508, 863
BstSCI	CCNGG	3 cut(s)	265, 266, 466
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	334, 440
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	276, 280, 535, 605
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	619, 722
Cfr9I	CCCGGG	1 cut(s)	266
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	194, 689
CviAII	CATG	3 cut(s)	60, 505, 860
CviQI	GTAC	2 cut(s)	194, 689
DdeI	CTNAG	3 cut(s)	516, 615, 726
DpnI	GATC	4 cut(s)	117, 635, 702, 879
DpnII	GATC	4 cut(s)	115, 633, 700, 877
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	619, 722
Eco57I	CTGAAG	3 cut(s)	302, 417, 569
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	619, 722
EcoRII	CCWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	3 cut(s)	63, 508, 863
FaqI	GGGAC	1 cut(s)	870
FatI	CATG	3 cut(s)	59, 504, 859
FauI	CCCGC	1 cut(s)	686
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	2 cut(s)	409, 801
Fnu4HI	GCNGC	4 cut(s)	348, 429, 921, 924
FokI	GGATG	4 cut(s)	283, 287, 542, 612
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	348, 429, 921, 924
FspBI	CTAG	3 cut(s)	395, 441, 590
GluI	GCNGC	4 cut(s)	348, 429, 921, 924
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	2 cut(s)	267, 754
HgaI	GACGC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	63, 508, 863
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	521, 814, 830
HpaII	CCGG	2 cut(s)	267, 754
Hpy166II	GTNNAC	3 cut(s)	410, 605, 802
Hpy188I	TCNGA	7 cut(s)	388, 436, 490, 549, 616, 638, 760
Hpy188III	TCNNGA	2 cut(s)	518, 895
Hpy8I	GTNNAC	3 cut(s)	410, 605, 802
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	277, 544, 789, 847
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	7 cut(s)	17, 350, 428, 533, 719, 764, 825
HpyF10VI	GCNNNNNNNGC	1 cut(s)	917
HpyF3I	CTNAG	3 cut(s)	516, 615, 726
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	3 cut(s)	63, 508, 863
KpnI	GGTACC	1 cut(s)	692
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	115, 633, 700, 877
LmnI	GCTCC	4 cut(s)	91, 362, 469, 680
Lsp1109I	GCAGC	2 cut(s)	334, 440
LweI	GCATC	3 cut(s)	358, 520, 751
MaeI	CTAG	3 cut(s)	395, 441, 590
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	4 cut(s)	117, 635, 702, 879
MboI	GATC	4 cut(s)	115, 633, 700, 877
MboII	GAAGA	3 cut(s)	31, 897, 926
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	2 cut(s)	174, 299
MluCI	AATT	5 cut(s)	69, 136, 223, 564, 696
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	2 cut(s)	800, 853
MnlI	CCTC	8 cut(s)	141, 184, 202, 352, 610, 836, 839, 902
MseI	TTAA	4 cut(s)	257, 423, 567, 744
MspA1I	CMGCKG	1 cut(s)	681
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	2 cut(s)	267, 754
MspR9I	CCNGG	3 cut(s)	267, 268, 468
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	917
NciI	CCSGG	2 cut(s)	267, 268
NdeII	GATC	4 cut(s)	115, 633, 700, 877
NlaIII	CATG	3 cut(s)	63, 508, 863
NlaIV	GGNNCC	3 cut(s)	231, 555, 690
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	2 cut(s)	508, 863
PceI	AGGCCT	1 cut(s)	445
PciI	ACATGT	1 cut(s)	859
PfeI	GAWTC	2 cut(s)	521, 814
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	349, 430, 922, 925
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
PpuMI	RGGWCCY	2 cut(s)	619, 722
PscI	ACATGT	1 cut(s)	859
Psp5II	RGGWCCY	2 cut(s)	619, 722
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	3 cut(s)	231, 555, 690
PspPI	GGNCC	2 cut(s)	619, 722
PspPPI	RGGWCCY	2 cut(s)	619, 722
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	877
RsaI	GTAC	2 cut(s)	195, 690
RsaNI	GTAC	2 cut(s)	194, 689
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	4 cut(s)	257, 423, 567, 744
SatI	GCNGC	4 cut(s)	348, 429, 921, 924
Sau3AI	GATC	4 cut(s)	115, 633, 700, 877
Sau96I	GGNCC	2 cut(s)	619, 722
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	3 cut(s)	267, 268, 468
SduI	GDGCHC	2 cut(s)	174, 299
SfaNI	GCATC	3 cut(s)	358, 520, 751
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	619, 722
SmaI	CCCGGG	1 cut(s)	268
SmlI	CTYRAG	3 cut(s)	81, 743, 893
SmoI	CTYRAG	3 cut(s)	81, 743, 893
Sse9I	AATT	5 cut(s)	69, 136, 223, 564, 696
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	2 cut(s)	418, 679
SspMI	CTAG	3 cut(s)	395, 441, 590
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	265, 266, 466
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	3 cut(s)	109, 374, 409
TasI	AATT	5 cut(s)	69, 136, 223, 564, 696
TfiI	GAWTC	2 cut(s)	521, 814
Tru1I	TTAA	4 cut(s)	257, 423, 567, 744
Tru9I	TTAA	4 cut(s)	257, 423, 567, 744
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	347, 428, 920, 923
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	31
TspMI	CCCGGG	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	619, 722
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	2 cut(s)	508, 863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	266
XmiI	GTMKAC	2 cut(s)	409, 801
XspI	CTAG	3 cut(s)	395, 441, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.