Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

16916970 .. 16921539

Gene Structure 4570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAGAAGCTACCATCACAAGAAGCCACAGCCAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGTGGGATATCAGTCTCTGAAGCACCTATCACTCCTACTGGATTTCGATGGGATCGACAATGGTTAGTTATAAACGAAAAAAGGAGAGCATATACTCAAAGAGTTGCACCAAAGCTTGCATGTGTTGAGGTACAGCTACCAAACGAGGCATTCCTAGAGGGTTGGGAACCTACTAGCAGCTCTTATCTGGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGTAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCAGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGCTGCATGCTGTGCTTCCGCTGTAAGATACCTACGGTGAATCAAGAGACTGGCATTCGAGGAACTGAGCCAAATGAAACTCTGAAGAAATTTCGATCGGATGCAATTGTGTATCCATCTCGGAAACAGCGGAGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCCATGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTACCTACAATCAATCAAGCGACTGGCATTGCAGGACCTGAGCCAAACGACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTCGGGCAGAATCTTGTTTGGAGAGACTCTGTTACAGGAGATGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTGATGAAGCAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

398

Amino Acids

44.29

Weight (kDa)

8.31

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	11 - 138	1.2e-31	MOSC N-terminal beta barrel domain
MOSC	PF03473	172 - 305	2.3e-21	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccI	GTMKAC	3 cut(s)	418, 840, 1068
AciI	CCGC	2 cut(s)	718, 829
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	5 cut(s)	111, 311, 426, 608, 803
AfaI	GTAC	4 cut(s)	204, 288, 600, 957
AfiI	CCNNNNNNNGG	2 cut(s)	934, 1162
AflII	CTTAAG	1 cut(s)	1010
AgsI	TTSAA	2 cut(s)	336, 698
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	10, 187, 208, 252, 374, 440, 1190
AluI	AGCT	7 cut(s)	10, 187, 208, 252, 374, 440, 1190
Alw26I	GTCTC	7 cut(s)	43, 91, 480, 558, 740, 1089, 1171
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	2 cut(s)	89, 992
ApeKI	GCWGC	6 cut(s)	249, 356, 437, 702, 1184, 1187
ApoI	RAATTY	1 cut(s)	788
AspS9I	GGNCC	2 cut(s)	592, 989
AsuHPI	GGTGA	1 cut(s)	748
AvaII	GGWCC	2 cut(s)	592, 989
BbvI	GCAGC	4 cut(s)	261, 343, 449, 689
BccI	CCATC	5 cut(s)	22, 114, 320, 823, 1156
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	562, 822
BcoDI	GTCTC	7 cut(s)	43, 91, 480, 558, 740, 1089, 1171
BfaI	CTAG	5 cut(s)	227, 246, 414, 450, 857
BfrI	CTTAAG	1 cut(s)	1010
BfuI	GTATCC	2 cut(s)	562, 822
BglII	AGATCT	2 cut(s)	913, 1141
BisI	GCNGC	6 cut(s)	250, 357, 438, 703, 1185, 1188
BlsI	GCNGC	6 cut(s)	251, 358, 439, 704, 1186, 1189
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	592, 989
BmgT120I	GGNCC	2 cut(s)	592, 989
BmiI	GGNNCC	3 cut(s)	240, 492, 594
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	6 cut(s)	367, 389, 569, 592, 790, 1018
BoxI	GACNNNNGTC	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	993
BpuEI	CTTGAG	1 cut(s)	1142
BsaI	GGTCTC	2 cut(s)	480, 1171
BsaWI	WCCGGW	1 cut(s)	1020
BsaXI	ACNNNNNCTCC	2 cut(s)	1131, 1161
Bsc4I	CCNNNNNNNGG	2 cut(s)	934, 1162
Bse1I	ACTGG	4 cut(s)	59, 115, 754, 982
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	289, 805
BseLI	CCNNNNNNNGG	2 cut(s)	934, 1162
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	3 cut(s)	569, 756, 984
BseNI	ACTGG	4 cut(s)	59, 115, 754, 982
BseXI	GCAGC	4 cut(s)	261, 343, 449, 689
BseYI	CCCAGC	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	1021
BslI	CCNNNNNNNGG	2 cut(s)	934, 1162
BsmAI	GTCTC	7 cut(s)	43, 91, 480, 558, 740, 1089, 1171
BsmBI	CGTCTC	1 cut(s)	558
BsmI	GAATGC	2 cut(s)	221, 753
Bso31I	GGTCTC	2 cut(s)	480, 1171
Bsp143I	GATC	4 cut(s)	124, 794, 913, 1141
BspACI	CCGC	2 cut(s)	718, 829
BspCNI	CTCAG	3 cut(s)	568, 757, 985
BspLI	GGNNCC	3 cut(s)	240, 492, 594
BspPI	GGATC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	1010
BspTNI	GGTCTC	2 cut(s)	480, 1171
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	4 cut(s)	59, 115, 754, 982
BssMI	GATC	4 cut(s)	124, 794, 913, 1141
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	4 cut(s)	465, 611, 638, 736
Bst6I	CTCTTC	1 cut(s)	1174
BstAFI	CTTAAG	1 cut(s)	1010
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	189, 707, 883
BstDEI	CTNAG	4 cut(s)	361, 555, 765, 993
BstF5I	GGATG	2 cut(s)	289, 805
BstKTI	GATC	4 cut(s)	127, 797, 916, 1144
BstMAI	GTCTC	7 cut(s)	43, 91, 480, 558, 740, 1089, 1171
BstMBI	GATC	4 cut(s)	124, 794, 913, 1141
BstMCI	CGRYCG	1 cut(s)	797
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 711, 1181
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	2 cut(s)	195, 709
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	4 cut(s)	261, 343, 449, 689
BstX2I	RGATCY	2 cut(s)	913, 1141
BstYI	RGATCY	2 cut(s)	913, 1141
BsuI	GTATCC	2 cut(s)	562, 822
BtsCI	GGATG	2 cut(s)	289, 805
Cac8I	GCNNGC	3 cut(s)	189, 707, 883
CaiI	CAGNNNCTG	2 cut(s)	89, 992
Cfr13I	GGNCC	2 cut(s)	592, 989
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	4 cut(s)	203, 287, 599, 956
CviAII	CATG	8 cut(s)	69, 192, 280, 520, 706, 866, 923, 934
CviQI	GTAC	4 cut(s)	203, 287, 599, 956
DdeI	CTNAG	4 cut(s)	361, 555, 765, 993
DpnI	GATC	4 cut(s)	126, 796, 915, 1143
DpnII	GATC	4 cut(s)	124, 794, 913, 1141
Eam1104I	CTCTTC	1 cut(s)	1174
EarI	CTCTTC	1 cut(s)	1174
Eco31I	GGTCTC	2 cut(s)	480, 1171
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	592, 989
Eco57I	CTGAAG	5 cut(s)	111, 311, 426, 608, 803
EcoO109I	RGGNCCY	2 cut(s)	592, 989
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	8 cut(s)	72, 195, 283, 523, 709, 869, 926, 937
FatI	CATG	8 cut(s)	68, 191, 279, 519, 705, 865, 922, 933
FblI	GTMKAC	3 cut(s)	418, 840, 1068
Fnu4HI	GCNGC	6 cut(s)	250, 357, 438, 703, 1185, 1188
FokI	GGATG	2 cut(s)	296, 812
Fsp4HI	GCNGC	6 cut(s)	250, 357, 438, 703, 1185, 1188
FspBI	CTAG	5 cut(s)	227, 246, 414, 450, 857
GluI	GCNGC	6 cut(s)	250, 357, 438, 703, 1185, 1188
GsaI	CCCAGC	1 cut(s)	507
HapII	CCGG	1 cut(s)	1021
HgaI	GACGC	1 cut(s)	540
Hin1II	CATG	8 cut(s)	72, 195, 283, 523, 709, 869, 926, 937
HincII	GTYRAC	2 cut(s)	419, 634
HindII	GTYRAC	2 cut(s)	419, 634
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	304, 739, 869, 1081, 1097
HpaII	CCGG	1 cut(s)	1021
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	6 cut(s)	308, 419, 634, 644, 841, 1069
Hpy188III	TCNNGA	3 cut(s)	743, 1129, 1159
Hpy8I	GTNNAC	6 cut(s)	308, 419, 634, 644, 841, 1069
HpyAV	CCTTC	6 cut(s)	583, 828, 883, 1056, 1111, 1126
HpyCH4III	ACNGT	4 cut(s)	465, 611, 638, 736
HpyCH4IV	ACGT	1 cut(s)	1039
HpyCH4V	TGCA	8 cut(s)	179, 191, 380, 437, 705, 803, 986, 1031
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 711, 1181
HpyF3I	CTNAG	4 cut(s)	361, 555, 765, 993
HpySE526I	ACGT	1 cut(s)	1039
Hsp92II	CATG	8 cut(s)	72, 195, 283, 523, 709, 869, 926, 937
Kzo9I	GATC	4 cut(s)	124, 794, 913, 1141
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	4 cut(s)	261, 343, 449, 689
LweI	GCATC	6 cut(s)	367, 389, 569, 592, 790, 1018
MaeI	CTAG	5 cut(s)	227, 246, 414, 450, 857
MaeII	ACGT	1 cut(s)	1039
MaeIII	GTNAC	1 cut(s)	1102
MalI	GATC	4 cut(s)	126, 796, 915, 1143
MboI	GATC	4 cut(s)	124, 794, 913, 1141
MboII	GAAGA	7 cut(s)	40, 304, 668, 796, 908, 911, 1161
MfeI	CAATTG	1 cut(s)	804
MflI	RGATCY	2 cut(s)	913, 1141
MluCI	AATT	4 cut(s)	603, 685, 788, 804
MlyI	GAGTC	3 cut(s)	313, 863, 1091
MmeI	TCCRAC	4 cut(s)	552, 889, 1067, 1117
MnlI	CCTC	8 cut(s)	193, 211, 223, 361, 752, 938, 952, 1166
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	5 cut(s)	63, 266, 432, 606, 1011
MslI	CAYNNNNRTG	2 cut(s)	385, 697
MspA1I	CMGCKG	2 cut(s)	720, 829
MspCI	CTTAAG	1 cut(s)	1010
MspI	CCGG	1 cut(s)	1021
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	2 cut(s)	221, 753
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	557, 711, 1181
NdeII	GATC	4 cut(s)	124, 794, 913, 1141
NlaIII	CATG	8 cut(s)	72, 195, 283, 523, 709, 869, 926, 937
NlaIV	GGNNCC	3 cut(s)	240, 492, 594
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	195, 709
PaeI	GCATGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	2 cut(s)	221, 753
PfeI	GAWTC	2 cut(s)	739, 1081
PkrI	GCNGC	6 cut(s)	251, 358, 439, 704, 1186, 1189
Ple19I	CGATCG	1 cut(s)	797
PleI	GAGTC	3 cut(s)	312, 863, 1091
PpsI	GAGTC	3 cut(s)	312, 863, 1091
PpuMI	RGGWCCY	2 cut(s)	592, 989
PshAI	GACNNNNGTC	1 cut(s)	671
PsiI	TTATAA	1 cut(s)	143
Psp5II	RGGWCCY	2 cut(s)	592, 989
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	240, 492, 594
PspPI	GGNCC	2 cut(s)	592, 989
PspPPI	RGGWCCY	2 cut(s)	592, 989
PstNI	CAGNNNCTG	2 cut(s)	89, 992
PsuI	RGATCY	2 cut(s)	913, 1141
PvuI	CGATCG	1 cut(s)	797
RsaI	GTAC	4 cut(s)	204, 288, 600, 957
RsaNI	GTAC	4 cut(s)	203, 287, 599, 956
RseI	CAYNNNNRTG	2 cut(s)	385, 697
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	63, 266, 432, 606, 1011
SatI	GCNGC	6 cut(s)	250, 357, 438, 703, 1185, 1188
Sau3AI	GATC	4 cut(s)	124, 794, 913, 1141
Sau96I	GGNCC	2 cut(s)	592, 989
SchI	GAGTC	3 cut(s)	313, 863, 1091
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	6 cut(s)	367, 389, 569, 592, 790, 1018
SinI	GGWCC	2 cut(s)	592, 989
SmiMI	CAYNNNNRTG	2 cut(s)	385, 697
SmlI	CTYRAG	2 cut(s)	1010, 1157
SmoI	CTYRAG	2 cut(s)	1010, 1157
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	4 cut(s)	603, 685, 788, 804
SsiI	CCGC	2 cut(s)	718, 829
SspMI	CTAG	5 cut(s)	227, 246, 414, 450, 857
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	4 cut(s)	465, 611, 638, 736
TaiI	ACGT	1 cut(s)	1042
TaqI	TCGA	5 cut(s)	118, 127, 418, 757, 793
TasI	AATT	4 cut(s)	603, 685, 788, 804
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	739, 1081
Tru1I	TTAA	5 cut(s)	63, 266, 432, 606, 1011
Tru9I	TTAA	5 cut(s)	63, 266, 432, 606, 1011
TseI	GCWGC	6 cut(s)	249, 356, 437, 702, 1184, 1187
TspDTI	ATGAA	5 cut(s)	40, 789, 911, 966, 1194
Vha464I	CTTAAG	1 cut(s)	1010
VpaK11BI	GGWCC	2 cut(s)	592, 989
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	2 cut(s)	195, 709
XmiI	GTMKAC	3 cut(s)	418, 840, 1068
XspI	CTAG	5 cut(s)	227, 246, 414, 450, 857
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.