Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001394

Physical Location & Seq

Genomic Coordinates Reverse (-)

15818463 .. 15820291

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG155100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCATCTTATGCTGTTATTTATGTGGGATCACTGGATGCGCTAAATGAGCTTCTGAAGGAACCCATACCAGTTAACCGATTTAGACCCAACATTCTTGTTAACGGATGTGAACCATTTTCTGAAGACCTATGGACAGATATCAGGATAGACAAGCTAACATTTCAAGGTGTCAAGCTATGCTCCCGCTGTAAGGTACCTACAATCAATCAAGCTACTGGCATTGCAGGAACTGAGCCAACCAACACTCTTAAGAAAATCCGGTCTGATGCAGTTTTACGTCCAACAGGAAAACAGCAGGGAAGGGTCTACTTTGGGCAGCATCTTGTTTGGAGAGACTCTGTTACAGGAGGTGTGAAGGGAAATGTCGTGAAGGTTGGAGATCTTGTTTATGTCCTCAAGATGGTCTCTTCTGCTAATGAAGCAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

144

Amino Acids

15.75

Weight (kDa)

9.24

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC	PF03473	7 - 130	3.5e-19	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30910 AT5G44720
fragaria_vesca	FvH4_3g13080 FvH4_3g13080 FvH4_3g13080 FvH4_3g13081
malus_domestica	MD10G1226500.v1.1
prunus_persica	Prupe.1G101100_v2.0.a1
pyrus_communis	pycom10g19040
rosa_chinensis	RchiOBHm_Chr4g0419251 RchiOBHm_Chr5g0021271 RchiOBHm_Chr5g0021291 RchiOBHm_Chr5g0021301 RchiOBHm_Chr5g0021311
rosa_laevigata	RLG00000020206 RLG00000032601 RLG00000032602 RLG00000032603
rosa_multiflora	Rmu_sc0000133.1_g000012 Rmu_sc0003392.1_g000008 Rmu_sc0003392.1_g000010 Rmu_sc0004847.1_g000004 Rmu_sc0004847.1_g000013 Rmu_sc0004847.1_g000015 Rmu_sc0013135.1_g000004 Rmu_sc0019607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057190 Rroxscaffold_1G00057220 Rroxscaffold_1G00057230 Rroxscaffold_2G00133180 Rroxscaffold_2G00133250
rosa_rugosa	Rorug03G0251200 Rorug05G0066100 Rorug05G0066200
rosa_samantha	Rh2BG445200 Rh2DG455600 Rh5AG154800 Rh5AG155000 Rh5AG155100 Rh5AG155200 Rh5BG154500 Rh5BG154800 Rh5CG168200 Rh5CG168300 Rh5DG155100 Rh5DG155400
rosa_wichuraiana	Rw2G035690 Rw5G013800 Rw5G013810 Rw5G013820 Rw5G013830 Rw5G013840 Rw7G041240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	2 cut(s)	77, 144
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	193, 403
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	5 cut(s)	52, 157, 178, 215, 431
AluI	AGCT	5 cut(s)	52, 157, 178, 215, 431
Alw26I	GTCTC	2 cut(s)	330, 412
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	319, 425, 428
Asp718I	GGTACC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	330, 412
BfrI	CTTAAG	1 cut(s)	251
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	3 cut(s)	320, 426, 429
BlsI	GCNGC	3 cut(s)	321, 427, 430
BmiI	GGNNCC	2 cut(s)	63, 198
BmsI	GCATC	4 cut(s)	14, 28, 259, 331
BpiI	GAAGAC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 403
Bse1I	ACTGG	3 cut(s)	39, 71, 223
Bse3DI	GCAATG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	43, 113
BseLI	CCNNNNNNNGG	2 cut(s)	193, 403
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	39, 71, 223
BseXI	GCAGC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	193, 403
BsmAI	GTCTC	2 cut(s)	330, 412
Bso31I	GGTCTC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	29, 382
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	63, 198
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	3 cut(s)	39, 71, 223
BssMI	GATC	2 cut(s)	29, 382
Bst6I	CTCTTC	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	43, 113
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	32, 385
BstMAI	GTCTC	2 cut(s)	330, 412
BstMBI	GATC	2 cut(s)	29, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 49, 422
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	43, 113
BtsIMutI	CAGTG	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	197
CviJI	RGCY	6 cut(s)	52, 157, 178, 215, 238, 431
CviKI_1	RGCY	6 cut(s)	52, 157, 178, 215, 238, 431
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	31, 384
DpnII	GATC	2 cut(s)	29, 382
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	77, 144
EcoRV	GATATC	1 cut(s)	142
FaiI	YATR	6 cut(s)	12, 24, 68, 133, 181, 393
FauI	CCCGC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	320, 426, 429
FokI	GGATG	2 cut(s)	50, 120
Fsp4HI	GCNGC	3 cut(s)	320, 426, 429
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	320, 426, 429
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	2 cut(s)	76, 103
HindII	GTYRAC	2 cut(s)	76, 103
HinfI	GANTC	1 cut(s)	338
HpaI	GTTAAC	2 cut(s)	76, 103
HpaII	CCGG	1 cut(s)	262
Hpy166II	GTNNAC	4 cut(s)	76, 103, 113, 310
Hpy188I	TCNGA	3 cut(s)	57, 124, 268
Hpy188III	TCNNGA	3 cut(s)	145, 370, 400
Hpy8I	GTNNAC	4 cut(s)	76, 103, 113, 310
HpyAV	CCTTC	4 cut(s)	52, 297, 352, 367
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	227, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 49, 422
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	280
HspAI	GCGC	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	200
KspAI	GTTAAC	2 cut(s)	76, 103
Kzo9I	GATC	2 cut(s)	29, 382
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	9 cut(s)	20, 84, 130, 204, 213, 273, 275, 284, 333
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	4 cut(s)	14, 28, 259, 331
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	31, 384
MboI	GATC	2 cut(s)	29, 382
MboII	GAAGA	2 cut(s)	137, 402
MflI	RGATCY	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	308, 358
MnlI	CCTC	2 cut(s)	344, 407
MseI	TTAA	3 cut(s)	75, 102, 252
MspA1I	CMGCKG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	11, 49, 422
NdeII	GATC	2 cut(s)	29, 382
NlaIV	GGNNCC	2 cut(s)	63, 198
PkrI	GCNGC	3 cut(s)	321, 427, 430
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	63, 198
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	75, 102, 252
SatI	GCNGC	3 cut(s)	320, 426, 429
Sau3AI	GATC	2 cut(s)	29, 382
SchI	GAGTC	1 cut(s)	332
SfaNI	GCATC	4 cut(s)	14, 28, 259, 331
SmlI	CTYRAG	2 cut(s)	251, 398
SmoI	CTYRAG	2 cut(s)	251, 398
SsiI	CCGC	1 cut(s)	187
TaiI	ACGT	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	75, 102, 252
Tru9I	TTAA	3 cut(s)	75, 102, 252
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	3 cut(s)	319, 425, 428
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.