Rorug05G0066200

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001394
Physical Location & Seq
Reverse (-)
5711297 .. 5712733
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0066200.1

Sequence Viewer

Length: 1014 bp
ATGTTCACCACTAACCCTCTCCACACTATTATACACTACTCCAAAGTCCAAAGCAAGAGCACCCTCTTTTTTCATCACTTGCCATCATCCATGGCTCCTAGTGCGAAATTGCTCTCTTTCTTCTTCGTGCTATCTCTCCTCTTCTCTCAACAGGTTCAAGCTCGAAGTGTCTTCTTCAGCAAAGTAGCCAATGTGGACAACCACAACACTGAAGAGCTCCCCAACAAGGAGAGCACTGTTGTGACCAAGCAAGAGCAACAGCCAAACTTCATCCCCCAAACCCAAAACGGCTATGGTCTCTACGGCCACGAGTCTACCGAGCTGCCTCCCTCTACCAAGACCACAACCACAACCAACGCTGTACCATACTCCACCACCCCCACCAACAGTGAACATTACACCACCACCGCCACCAACGGTGAACCATACACCACCACCACAAGAACTACCGCCAACGACGACAACAACAACATTCCATACACACACTACAATCCCAACAAGAACAGCAACTACTACAACAACAACTACGAGACCAACCAAAACGGGATGAGTGACACAAGGTTAACGCAGCAGAAAGGCTACACCACTCCCACCACCACCCCAACCAGCCAAAACAGCAACAGCAACAACTACTACAATGTTGAGAGGCAAGGCATGAGCGACACAAGGTTTACGCAGCAGAGAGGCTACACCACTCCCACCACCACCACCCCAACCACCCAAAACAGCAACAGCAACAACTACTACAACGTTGAGAGGCAAGGCATGAGCGACACAAGGTTCTTGGAGAATGGTAAGTACTACTACGACCCCAACAGCGAGAACAACTACAATCAGAACCAGTACAAGAATTCCCAGGTGGTCGATTCAAGAAACTGGTACAACAACAACAACAATAACAACAACCGGGGTTACTATGGCAGCAACAATGGGAACCGGAACACCTTTGAGTCCAGCGACGTGTACCAGAACGAGGAGTTCCAAGAGAATGAAGATGACCAGTTTGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

337

Amino Acids

38.73

Weight (kDa)

5.61

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 314
AciI CCGC 2 cut(s) 408, 450
AclI AACGTT 1 cut(s) 750
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 850
AcuI CTGAAG 2 cut(s) 160, 231
AfaI GTAC 5 cut(s) 363, 800, 845, 881, 965
AfiI CCNNNNNNNGG 2 cut(s) 226, 973
AflIII ACRYGT 1 cut(s) 960
AgsI TTSAA 2 cut(s) 158, 870
AjiI CACGTC 1 cut(s) 961
AjnI CCWGG 1 cut(s) 855
AleI CACNNNNGTG 1 cut(s) 239
AluBI AGCT 3 cut(s) 161, 217, 322
AluI AGCT 3 cut(s) 161, 217, 322
Alw21I GWGCWC 3 cut(s) 62, 219, 236
Alw26I GTCTC 2 cut(s) 302, 524
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 4 cut(s) 322, 568, 676, 921
ApoI RAATTY 1 cut(s) 850
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 219
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 3 cut(s) 62, 219, 236
BbvI GCAGC 4 cut(s) 309, 580, 688, 933
BccI CCATC 1 cut(s) 91
BceAI ACGGC 2 cut(s) 304, 319
BciT130I CCWGG 1 cut(s) 857
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 2 cut(s) 302, 524
BfaI CTAG 1 cut(s) 99
BisI GCNGC 4 cut(s) 323, 569, 677, 922
BlsI GCNGC 4 cut(s) 324, 570, 678, 923
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 2 cut(s) 857, 908
BmgBI CACGTC 1 cut(s) 961
BmiI GGNNCC 2 cut(s) 96, 935
BmrFI CCNGG 2 cut(s) 857, 908
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 908
BsaI GGTCTC 2 cut(s) 302, 524
BsaJI CCNNGG 3 cut(s) 90, 855, 907
BsaWI WCCGGW 1 cut(s) 936
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 973
Bse1I ACTGG 3 cut(s) 841, 881, 1000
BseBI CCWGG 1 cut(s) 857
BseDI CCNNGG 3 cut(s) 90, 855, 907
BseGI GGATG 3 cut(s) 86, 270, 552
BseLI CCNNNNNNNGG 2 cut(s) 226, 973
BseNI ACTGG 3 cut(s) 841, 881, 1000
BseRI GAGGAG 2 cut(s) 128, 989
BseXI GCAGC 4 cut(s) 309, 580, 688, 933
BshFI GGCC 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 62, 219, 236
BsiSI CCGG 2 cut(s) 907, 937
BslI CCNNNNNNNGG 2 cut(s) 226, 973
BsmAI GTCTC 2 cut(s) 302, 524
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 2 cut(s) 302, 524
Bsp1286I GDGCHC 3 cut(s) 62, 219, 236
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 2 cut(s) 408, 450
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 96, 935
BspQI GCTCTTC 1 cut(s) 207
BspTNI GGTCTC 2 cut(s) 302, 524
BsrI ACTGG 3 cut(s) 841, 881, 1000
BssECI CCNNGG 3 cut(s) 90, 855, 907
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 857
Bst4CI ACNGT 3 cut(s) 238, 389, 419
Bst6I CTCTTC 2 cut(s) 146, 207
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 3 cut(s) 86, 270, 552
BstMAI GTCTC 2 cut(s) 302, 524
BstMWI GCNNNNNNNGC 2 cut(s) 101, 615
BstNI CCWGG 1 cut(s) 857
BstSCI CCNGG 2 cut(s) 855, 906
BstV1I GCAGC 4 cut(s) 309, 580, 688, 933
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 961
BtsCI GGATG 3 cut(s) 86, 270, 552
BtsIMutI CAGTG 3 cut(s) 207, 234, 394
Csp6I GTAC 5 cut(s) 362, 799, 844, 880, 964
CviAII CATG 4 cut(s) 91, 655, 766, 1011
CviQI GTAC 5 cut(s) 362, 799, 844, 880, 964
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 146, 207
EarI CTCTTC 2 cut(s) 146, 207
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 2 cut(s) 302, 524
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 160, 231
EcoICRI GAGCTC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 94, 658, 769, 1014
FatI CATG 4 cut(s) 90, 654, 765, 1010
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 4 cut(s) 323, 569, 677, 922
FokI GGATG 3 cut(s) 73, 257, 559
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 4 cut(s) 323, 569, 677, 922
FspBI CTAG 1 cut(s) 99
GluI GCNGC 4 cut(s) 323, 569, 677, 922
HaeIII GGCC 1 cut(s) 306
HapII CCGG 2 cut(s) 907, 937
Hin1II CATG 4 cut(s) 94, 658, 769, 1014
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 3 cut(s) 311, 866, 950
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 2 cut(s) 907, 937
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 8 cut(s) 6, 196, 315, 392, 422, 564, 672, 964
Hpy188I TCNGA 1 cut(s) 837
Hpy188III TCNNGA 1 cut(s) 870
Hpy8I GTNNAC 8 cut(s) 6, 196, 315, 392, 422, 564, 672, 964
Hpy99I CGWCG 2 cut(s) 461, 962
HpyCH4III ACNGT 3 cut(s) 238, 389, 419
HpyCH4IV ACGT 2 cut(s) 750, 960
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 615
HpySE526I ACGT 2 cut(s) 750, 960
Hsp92II CATG 4 cut(s) 94, 658, 769, 1014
KspAI GTTAAC 1 cut(s) 564
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 100, 222
Lsp1109I GCAGC 4 cut(s) 309, 580, 688, 933
MaeI CTAG 1 cut(s) 99
MaeII ACGT 2 cut(s) 750, 960
MaeIII GTNAC 3 cut(s) 241, 551, 911
MboII GAAGA 7 cut(s) 112, 115, 133, 163, 166, 224, 1004
MhlI GDGCHC 3 cut(s) 62, 219, 236
MluCI AATT 2 cut(s) 107, 850
MlyI GAGTC 2 cut(s) 320, 959
MnlI CCTC 9 cut(s) 27, 74, 149, 336, 340, 639, 677, 750, 967
MseI TTAA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 2 cut(s) 907, 937
MspR9I CCNGG 2 cut(s) 857, 908
MvaI CCWGG 1 cut(s) 857
MwoI GCNNNNNNNGC 2 cut(s) 101, 615
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 1 cut(s) 90
NlaIII CATG 4 cut(s) 94, 658, 769, 1014
NlaIV GGNNCC 2 cut(s) 96, 935
NmuCI GTSAC 2 cut(s) 241, 551
OliI CACNNNNGTG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 866
PkrI GCNGC 4 cut(s) 324, 570, 678, 923
PleI GAGTC 2 cut(s) 319, 958
PpsI GAGTC 2 cut(s) 319, 958
Psp124BI GAGCTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 855
PspGI CCWGG 1 cut(s) 855
PspN4I GGNNCC 2 cut(s) 96, 935
PsrI GAACNNNNNNTAC 2 cut(s) 494, 526
RsaI GTAC 5 cut(s) 363, 800, 845, 881, 965
RsaNI GTAC 5 cut(s) 362, 799, 844, 880, 964
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 4 cut(s) 323, 569, 677, 922
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 2 cut(s) 320, 959
ScrFI CCNGG 2 cut(s) 857, 908
SduI GDGCHC 3 cut(s) 62, 219, 236
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 2 cut(s) 107, 850
SsiI CCGC 2 cut(s) 408, 450
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 855, 906
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 238, 389, 419
TaiI ACGT 2 cut(s) 753, 963
TaqI TCGA 2 cut(s) 163, 864
TasI AATT 2 cut(s) 107, 850
TatI WGTACW 2 cut(s) 798, 843
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 3 cut(s) 214, 241, 394
TseFI GTSAC 2 cut(s) 241, 551
TseI GCWGC 4 cut(s) 322, 568, 676, 921
Tsp45I GTSAC 2 cut(s) 241, 551
TspDTI ATGAA 3 cut(s) 62, 259, 1005
TspRI CASTG 3 cut(s) 214, 241, 394
XapI RAATTY 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.