FvH4_3g13080

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000887
Physical Location & Seq
Reverse (-)
7814586 .. 7819312
4727 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13080.t1

Sequence Viewer

Length: 639 bp
ATGGAGAAGCTACCATCACAAGAAGCCACAGCCAAAGTCTCATCAATTTTTGTATATCCAATTAAATCATGTGGAGGGATTTCAGTTTCTGAAGCACCTATCACTCCTACTGGATTTCGATGGGACCGACAATGGATGGTTATAAATGCGAAAGGAAGAGCTTATACTCAAAGAGTTGAACCAAAGCTTGCTTGTGTTGAGGTACATCTACCAAAAGAGGCATTCCAAGAGGGTTGGGAACCTTCCAGCAGCTCTTATATGGTATTAAAAGCACCTGGGATGGATGTGCTGGAGATTTCCTTGAGTACACCACAAGTTAGAGTAAAAGGGGTTAGAGTATGGGAGTGGACTGGTGATGCAGTAGATGAGGGAGATGATGCGTCAAAATGGTTTTCAGATTATCTGGGGAAACCTAGTAGTCGACTTGTCCGATTTAATTCAGCTTCAGCTACCAGACCTGTGAAAACTTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATATGCTCGGGGGAAGCAAATAATGTTCTCTGACCTTTTTCCATACATGATAGCATCTCAGGCATCATTGGATACACTAAATGAGCACTTGAAGGACCCTGTACCCATAAACCGTTTCAGGCCTAAATACCTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

213

Amino Acids

23.99

Weight (kDa)

9.0

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 11 - 138 2.7e-36 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AccI GTMKAC 1 cut(s) 421
AcuI CTGAAG 2 cut(s) 111, 429
AfaI GTAC 3 cut(s) 204, 307, 603
AgsI TTSAA 2 cut(s) 179, 592
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 6 cut(s) 10, 161, 187, 252, 443, 449
AluI AGCT 6 cut(s) 10, 161, 187, 252, 443, 449
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 43, 483
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 124, 595
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 2 cut(s) 124, 595
AxyI CCTNAGG 1 cut(s) 632
BarI GAAGNNNNNNTAC 2 cut(s) 148, 180
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 22, 114, 130, 274
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 43, 483
BfaI CTAG 1 cut(s) 414
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 2 cut(s) 124, 595
BmeT110I CYCGRG 1 cut(s) 507
BmgT120I GGNCC 2 cut(s) 124, 595
BmiI GGNNCC 4 cut(s) 125, 240, 495, 597
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 4 cut(s) 346, 367, 563, 572
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 115, 355
Bse21I CCTNAGG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 3 cut(s) 141, 285, 289
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 2 cut(s) 115, 355
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 43, 483
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 622
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 588
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 125, 240, 495, 597
BspQI GCTCTTC 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 483
BsrI ACTGG 2 cut(s) 115, 355
BssECI CCNNGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 614
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 558, 632
BstF5I GGATG 3 cut(s) 141, 285, 289
BstMAI GTCTC 2 cut(s) 43, 483
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 632
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 1 cut(s) 622
BtsCI GGATG 3 cut(s) 141, 285, 289
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 124, 595
CseI GACGC 1 cut(s) 369
Csp6I GTAC 3 cut(s) 203, 306, 602
CviAII CATG 2 cut(s) 69, 547
CviJI RGCY 9 cut(s) 10, 26, 32, 161, 187, 252, 443, 449, 622
CviKI_1 RGCY 9 cut(s) 10, 26, 32, 161, 187, 252, 443, 449, 622
CviQI GTAC 3 cut(s) 203, 306, 602
DdeI CTNAG 2 cut(s) 558, 632
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 622
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 124, 595
Eco57I CTGAAG 2 cut(s) 111, 429
Eco81I CCTNAGG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 72, 550
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 68, 546
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 3 cut(s) 148, 292, 296
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 1 cut(s) 414
GluI GCNGC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 622
HgaI GACGC 1 cut(s) 369
Hin1II CATG 2 cut(s) 72, 550
HincII GTYRAC 1 cut(s) 422
HindII GTYRAC 1 cut(s) 422
HindIII AAGCTT 1 cut(s) 185
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 3 cut(s) 308, 348, 422
Hpy188I TCNGA 4 cut(s) 91, 397, 431, 532
Hpy8I GTNNAC 3 cut(s) 308, 348, 422
HpyAV CCTTC 2 cut(s) 252, 586
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 2 cut(s) 558, 632
Hsp92II CATG 2 cut(s) 72, 550
LguI GCTCTTC 1 cut(s) 151
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 4 cut(s) 346, 367, 563, 572
MaeI CTAG 1 cut(s) 414
MboII GAAGA 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 3 cut(s) 45, 60, 436
MnlI CCTC 5 cut(s) 68, 193, 211, 223, 361
MseI TTAA 3 cut(s) 63, 266, 435
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 560
NlaIII CATG 2 cut(s) 72, 550
NlaIV GGNNCC 4 cut(s) 125, 240, 495, 597
PceI AGGCCT 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 2 cut(s) 124, 427
PctI GAATGC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 595
PsiI TTATAA 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 4 cut(s) 125, 240, 495, 597
PspPI GGNCC 2 cut(s) 124, 595
PspPPI RGGWCCY 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 3 cut(s) 204, 307, 603
RsaNI GTAC 3 cut(s) 203, 306, 602
SalI GTCGAC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 63, 266, 435
SatI GCNGC 1 cut(s) 250
Sau96I GGNCC 2 cut(s) 124, 595
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 588
SfaNI GCATC 4 cut(s) 346, 367, 563, 572
SinI GGWCC 2 cut(s) 124, 595
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 45, 60, 436
SseBI AGGCCT 1 cut(s) 622
SspMI CTAG 1 cut(s) 414
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 614
TaqI TCGA 2 cut(s) 118, 421
TaqII GACCGA 1 cut(s) 141
TasI AATT 3 cut(s) 45, 60, 436
TatI WGTACW 1 cut(s) 305
Tru1I TTAA 3 cut(s) 63, 266, 435
Tru9I TTAA 3 cut(s) 63, 266, 435
TseI GCWGC 1 cut(s) 249
VpaK11BI GGWCC 2 cut(s) 124, 595
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.