Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

146771 .. 151201

Gene Structure 4431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTGGGCTTGTCTATTGTTTCAACTACTGAATGGGTGAAGGGGAAGCAAATGGAGGAGGTCCTGACTATTAAGAACACACACTGTCCATTGGCTAATTCCAGCATTGAAGAAGTTGCCTCAACAGGACCTGGTATTCGCTTGTTCCAACTGTATGTGTTCAAAGACGAGAATCTGGTTACACGGCTTGTCGGAAGGGCCGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTAACACTCCAAGGCTCGGGCGCAGGGACGCTGATATCAAGAACAGCATTGTGTTAATGAAATTGCAGACCAATGATTACGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTTAGCTGGAAGCGGGGATCTGTCATTCATTTTTCAGTATTAAAAGCACCTGGCATGGATGTACCGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGAAAACCTAGTCGACTTGTTCGCTTTAATGCAGGTACAGTTTCATGTGGTACTTTCAAAAGAGTCGCACGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

203

Amino Acids

22.24

Weight (kDa)

9.39

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	31 - 98	5.2e-15	FMN-dependent dehydrogenase
MOSC_N	PF03476	131 - 181	4.1e-06	MOSC N-terminal beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	606
AciI	CCGC	2 cut(s)	349, 367
AclWI	GGATC	1 cut(s)	379
AfaI	GTAC	3 cut(s)	417, 571, 586
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	24, 110, 163, 465, 592
AjnI	CCWGG	2 cut(s)	130, 403
AluBI	AGCT	2 cut(s)	360, 503
AluI	AGCT	2 cut(s)	360, 503
AlwI	GGATC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	61, 128, 198
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	61, 128
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	132, 405
BfaI	CTAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	132, 405
Bme18I	GGWCC	2 cut(s)	61, 128
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	61, 128, 198
BmrFI	CCNGG	2 cut(s)	132, 405
BmsI	GCATC	3 cut(s)	332, 496, 518
BsaBI	GATNNNNATC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	132, 405
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	349, 367
BspANI	GGCC	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	132, 405
Bst4CI	ACNGT	3 cut(s)	86, 153, 574
BstC8I	GCNNGC	2 cut(s)	349, 604
BstDEI	CTNAG	2 cut(s)	356, 490
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 357
BstNI	CCWGG	2 cut(s)	132, 405
BstSCI	CCNGG	2 cut(s)	130, 403
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	82, 231
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	349, 604
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	61, 128, 198
CseI	GACGC	1 cut(s)	272
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	416, 570, 585
CviAII	CATG	2 cut(s)	409, 579
CviJI	RGCY	8 cut(s)	9, 95, 187, 200, 209, 250, 360, 503
CviKI_1	RGCY	8 cut(s)	9, 95, 187, 200, 209, 250, 360, 503
CviQI	GTAC	3 cut(s)	416, 570, 585
DdeI	CTNAG	2 cut(s)	356, 490
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	61, 128
Eco88I	CYCGRG	1 cut(s)	251
EcoO109I	RGGNCCY	2 cut(s)	61, 128
EcoRII	CCWGG	2 cut(s)	130, 403
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	412, 582
FaiI	YATR	7 cut(s)	156, 328, 330, 410, 431, 469, 580
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	408, 578
FauI	CCCGC	2 cut(s)	356, 360
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	200
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	412, 582
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	548
HindII	GTYRAC	1 cut(s)	548
HinfI	GANTC	3 cut(s)	172, 433, 597
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	437, 548
Hpy188I	TCNGA	2 cut(s)	194, 526
Hpy188III	TCNNGA	2 cut(s)	64, 274
Hpy8I	GTNNAC	2 cut(s)	437, 548
HpyAV	CCTTC	2 cut(s)	34, 189
HpyCH4III	ACNGT	3 cut(s)	86, 153, 574
HpyCH4V	TGCA	3 cut(s)	301, 509, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 357
HpyF3I	CTNAG	2 cut(s)	356, 490
Hsp92II	CATG	2 cut(s)	412, 582
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	3 cut(s)	332, 496, 518
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	178, 212
MalI	GATC	1 cut(s)	373
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	1 cut(s)	371
MboII	GAAGA	2 cut(s)	122, 433
MflI	RGATCY	1 cut(s)	371
MluCI	AATT	2 cut(s)	97, 296
MlyI	GAGTC	2 cut(s)	442, 606
MmeI	TCCRAC	2 cut(s)	172, 172
MnlI	CCTC	6 cut(s)	49, 52, 130, 198, 239, 490
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	4 cut(s)	72, 290, 395, 561
MslI	CAYNNNNRTG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	132, 405
MvaI	CCWGG	2 cut(s)	132, 405
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	206, 357
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	412, 582
NmeAIII	GCCGAG	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	2 cut(s)	441, 605
PpsI	GAGTC	2 cut(s)	441, 605
PpuMI	RGGWCCY	2 cut(s)	61, 128
Psp5II	RGGWCCY	2 cut(s)	61, 128
Psp6I	CCWGG	2 cut(s)	130, 403
PspGI	CCWGG	2 cut(s)	130, 403
PspPI	GGNCC	3 cut(s)	61, 128, 198
PspPPI	RGGWCCY	2 cut(s)	61, 128
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	417, 571, 586
RsaNI	GTAC	3 cut(s)	416, 570, 585
RseI	CAYNNNNRTG	1 cut(s)	514
SalI	GTCGAC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	72, 290, 395, 561
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	3 cut(s)	61, 128, 198
SchI	GAGTC	2 cut(s)	442, 606
ScrFI	CCNGG	2 cut(s)	132, 405
SetI	ASST	7 cut(s)	63, 133, 362, 406, 505, 544, 571
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	332, 496, 518
SinI	GGWCC	2 cut(s)	61, 128
SmiMI	CAYNNNNRTG	1 cut(s)	514
Sse9I	AATT	2 cut(s)	97, 296
SsiI	CCGC	2 cut(s)	349, 367
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	130, 403
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	3 cut(s)	86, 153, 574
TaqI	TCGA	1 cut(s)	547
TasI	AATT	2 cut(s)	97, 296
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	4 cut(s)	72, 290, 395, 561
Tru9I	TTAA	4 cut(s)	72, 290, 395, 561
TscAI	CASTG	2 cut(s)	89, 238
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	308, 371, 567
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	89, 238
VpaK11BI	GGWCC	2 cut(s)	61, 128
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.