Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

6192346 .. 6205621

Gene Structure 13276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATTCGGATTAGCATTGTATGTTGCTGGACTGTTTGCCCGCTATCTCAGCTGGAAGCAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGATCCGCAATCTCCCAAATTACCCGAAAATAACCAAAGCATGTTTAATTAGCGAGAAGGACATTTCCTTTCTCCACTACGAGCAACCATTTAGAATCAAATACCATGATGACAGCAAATTCTCAATGCTCATAACCATGGAGATGCATCTAGCTAGTAACCAGAGGCCAAAGTATCTCACTGAGACCAGTTATGCCAAAAAGCATAAGCTGCACAATCCAAGGAAGAAACCCGCCTTAATCACCAACACCCGAAGCAAGACAACATTAGGAATACATACAACAGAAGCACAACAATCACAGGATATCATACGTGGTTCATTATACGTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0008891 GO:0009853 GO:0009987 GO:0010109 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0019048 GO:0019222 GO:0031323 GO:0035821 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051701 GO:0051704 GO:0051817 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

163

Amino Acids

18.59

Weight (kDa)

9.24

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	18 - 56	1.3e-12	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	41, 163, 390
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	275
AluBI	AGCT	6 cut(s)	52, 77, 83, 113, 311, 367
AluI	AGCT	6 cut(s)	52, 77, 83, 113, 311, 367
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	83, 367
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	70, 354
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	3 cut(s)	122, 308, 312
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	2 cut(s)	84, 368
BlsI	GCNGC	2 cut(s)	85, 369
BmsI	GCATC	2 cut(s)	291, 313
BpmI	CTGGAG	1 cut(s)	99
BsaAI	YACGTR	2 cut(s)	470, 484
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	294, 377
Bse1I	ACTGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	294, 377
BseMII	CTCAG	2 cut(s)	62, 330
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	70, 354
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	3 cut(s)	41, 163, 390
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	61, 331
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	294, 377
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	294, 377
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstBAI	YACGTR	2 cut(s)	470, 484
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	48, 339
BstDSI	CCRYGG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 83, 367
BstNSI	RCATGY	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	84
BstSNI	TACGTA	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	70, 354
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	41
CviAII	CATG	4 cut(s)	107, 198, 263, 295
CviJI	RGCY	8 cut(s)	52, 77, 83, 113, 149, 311, 325, 367
CviKI_1	RGCY	8 cut(s)	52, 77, 83, 113, 149, 311, 325, 367
DdeI	CTNAG	2 cut(s)	48, 339
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	113
Eco105I	TACGTA	1 cut(s)	484
Eco130I	CCWWGG	2 cut(s)	294, 377
Eco24I	GRGCYC	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	2 cut(s)	294, 377
EcoT22I	ATGCAT	2 cut(s)	71, 306
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	2 cut(s)	294, 377
FaeI	CATG	4 cut(s)	110, 201, 266, 298
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	106, 197, 262, 294
FauI	CCCGC	2 cut(s)	48, 397
Fnu4HI	GCNGC	2 cut(s)	84, 368
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	2 cut(s)	84, 368
FspBI	CTAG	3 cut(s)	122, 308, 312
GluI	GCNGC	2 cut(s)	84, 368
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	325
Hin1II	CATG	4 cut(s)	110, 201, 266, 298
HinfI	GANTC	2 cut(s)	4, 252
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	469, 483
HpyCH4V	TGCA	5 cut(s)	69, 86, 137, 304, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 83, 367
HpyF3I	CTNAG	2 cut(s)	48, 339
HpySE526I	ACGT	2 cut(s)	469, 483
Hsp92II	CATG	4 cut(s)	110, 201, 266, 298
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	80, 110
LpnPI	CCDG	8 cut(s)	13, 38, 63, 72, 147, 332, 358, 443
Lsp1109I	GCAGC	2 cut(s)	70, 354
LweI	GCATC	2 cut(s)	291, 313
MaeI	CTAG	3 cut(s)	122, 308, 312
MaeII	ACGT	2 cut(s)	469, 483
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	167, 394
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	4 cut(s)	93, 175, 204, 275
MnlI	CCTC	1 cut(s)	315
Mph1103I	ATGCAT	2 cut(s)	71, 306
MseI	TTAA	3 cut(s)	203, 395, 490
MslI	CAYNNNNRTG	2 cut(s)	293, 299
MspA1I	CMGCKG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	49, 83, 367
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	4 cut(s)	110, 201, 266, 298
NmeAIII	GCCGAG	1 cut(s)	94
NsiI	ATGCAT	2 cut(s)	71, 306
NspI	RCATGY	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	4, 252
PkrI	GCNGC	2 cut(s)	85, 369
Ppu21I	YACGTR	2 cut(s)	470, 484
Psp124BI	GAGCTC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	293, 299
SacI	GAGCTC	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	203, 395, 490
SatI	GCNGC	2 cut(s)	84, 368
Sau3AI	GATC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	9 cut(s)	54, 65, 79, 85, 115, 313, 369, 472, 486
SfaNI	GCATC	2 cut(s)	291, 313
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	293, 299
SnaBI	TACGTA	1 cut(s)	484
Sse9I	AATT	4 cut(s)	93, 175, 204, 275
SsiI	CCGC	3 cut(s)	41, 163, 390
SspMI	CTAG	3 cut(s)	122, 308, 312
SstI	GAGCTC	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	294, 377
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	2 cut(s)	472, 486
TasI	AATT	4 cut(s)	93, 175, 204, 275
TfiI	GAWTC	2 cut(s)	4, 252
Tru1I	TTAA	3 cut(s)	203, 395, 490
Tru9I	TTAA	3 cut(s)	203, 395, 490
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	2 cut(s)	83, 367
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	3 cut(s)	122, 308, 312
Zsp2I	ATGCAT	2 cut(s)	71, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.