Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

6732736 .. 6733122

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGGGAAATCAAGGTCCAAAAGCTCGTCCTCAACATCTCCGTTGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTGGAGCAACTCAGCGGCCAGACCCCTGTTTTCTCCAAAGCAACTCGGTACACTATGAGGTCTTTCGGAATCATGCGTAATGAGAAGATCGCTTGCTATGTTACTGTTAGGGGAGAGAAGGCAATGTCACTGTTGGAAAGTGGGCTGAAGGTGAAGGAGTATGAGCTTTTGCGTAAGAACTTCAGTGATACTGGCTGCTTTGGGTTCGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

9.55

Isoelectric Point (pI)

21.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 52	1.6e-16	Ribosomal protein L5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	3 cut(s)	54, 75, 99
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	2 cut(s)	250, 251
AfaI	GTAC	1 cut(s)	134
AluBI	AGCT	2 cut(s)	25, 250
AluI	AGCT	2 cut(s)	25, 250
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	2 cut(s)	72, 100
ApeKI	GCWGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	58, 247
AvaII	GGWCC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	55, 75, 100, 280
BlsI	GCNGC	4 cut(s)	56, 76, 101, 281
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	69, 78
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	69, 78
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 102
BsiEI	CGRYCG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	74, 102
Bsp143I	GATC	2 cut(s)	58, 171
BspACI	CCGC	3 cut(s)	54, 75, 99
BspANI	GGCC	2 cut(s)	74, 102
BspCNI	CTCAG	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	69, 78
BssMI	GATC	2 cut(s)	58, 171
BssT1I	CCWWGG	2 cut(s)	69, 78
Bst4CI	ACNGT	2 cut(s)	190, 216
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	61, 174
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	58, 171
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	74, 102
BtsIMutI	CAGTG	2 cut(s)	212, 274
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	6 cut(s)	25, 74, 102, 229, 250, 279
CviKI_1	RGCY	6 cut(s)	25, 74, 102, 229, 250, 279
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	60, 173
DpnII	GATC	2 cut(s)	58, 171
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	69, 78
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	250, 251
EcoT14I	CCWWGG	2 cut(s)	69, 78
ErhI	CCWWGG	2 cut(s)	69, 78
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	160
FaiI	YATR	4 cut(s)	140, 158, 183, 246
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	55, 75, 100, 280
Fsp4HI	GCNGC	4 cut(s)	55, 75, 100, 280
GluI	GCNGC	4 cut(s)	55, 75, 100, 280
HaeIII	GGCC	2 cut(s)	74, 102
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	1 cut(s)	153
HphI	GGTGA	2 cut(s)	58, 247
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	196, 226, 232
HpyCH4III	ACNGT	2 cut(s)	190, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	58, 171
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	116, 123, 261
Lsp1109I	GCAGC	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	184, 210
MalI	GATC	2 cut(s)	60, 173
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	58, 171
MboII	GAAGA	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	2 cut(s)	41, 135
MspA1I	CMGCKG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	58, 171
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	56, 76, 101, 281
Ple19I	CGATCG	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	4 cut(s)	55, 75, 100, 280
Sau3AI	GATC	2 cut(s)	58, 171
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	6 cut(s)	18, 27, 84, 146, 237, 252
SinI	GGWCC	1 cut(s)	16
SsiI	CCGC	3 cut(s)	54, 75, 99
StyI	CCWWGG	2 cut(s)	69, 78
TaaI	ACNGT	2 cut(s)	190, 216
TaqI	TCGA	1 cut(s)	291
TauI	GCSGC	3 cut(s)	57, 77, 102
TfiI	GAWTC	1 cut(s)	153
TscAI	CASTG	2 cut(s)	219, 274
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	219, 274
VpaK11BI	GGWCC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.