Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

13444811 .. 13447845

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGGGAAATCAAGGTCCGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTTGGAGCAACTCGGTGGCCGGACCCCGTTTTCTCCAAAGGTGTTCAAAGACAGGAATCTGGTTACACGGCTTGTCAGAAGGGCTGAGAGGGCTGATTACAAGGCAATAGTCCTCACTGCTGACACTCCAAGGCTCGGGGGCAGGGACGCTGATATCAAGAACAGGGAGCTGATGCATCAAAATGGTTTTAGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTGTAATGCAGGTACAGTTTCATGTGGTACTTTCAAAAGAGTCAGGCACGCGATTACGAGAATATTTCGACGGTGGTGGTATAAATTACAATTTTCAGTTCAGCTATGCAATTGCATGTTGTGCAGTTATTATGTATGTGTTGATATCATTATATTTTGCACATTTGAGTCTAGTTTCGAAACTAGACCTCGTGAAACCGTCCTTTTGGTCTCATAAACCTGTGGAACCTGAATGCTGCCGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATTCTTGATAGCTTCTCAGGTTAGGCAGATTGAGATGTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

208

Amino Acids

23.68

Weight (kDa)

9.88

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	34 - 93	1.1e-09	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	1 cut(s)	358
AciI	CCGC	2 cut(s)	53, 74
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	2 cut(s)	321, 336
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	130, 342
AluBI	AGCT	4 cut(s)	24, 253, 411, 593
AluI	AGCT	4 cut(s)	24, 253, 411, 593
Alw26I	GTCTC	2 cut(s)	67, 522
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	71, 100
ApeKI	GCWGC	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	16, 105
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	16, 105
BauI	CACGAG	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	67, 522
BfaI	CTAG	3 cut(s)	293, 479, 491
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	54, 74, 544
BlsI	GCNGC	3 cut(s)	55, 75, 545
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	16, 105
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	16, 105
BmiI	GGNNCC	2 cut(s)	107, 534
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	2 cut(s)	246, 268
Bpu14I	TTCGAA	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	4 cut(s)	68, 77, 212, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseDI	CCNNGG	4 cut(s)	68, 77, 212, 547
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	159, 611
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	73, 102
BsiEI	CGRYCG	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	103, 547
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	67, 522
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	73, 102
Bso31I	GGTCTC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	485
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	53, 74
BspANI	GGCC	2 cut(s)	73, 102
BspCNI	CTCAG	2 cut(s)	160, 610
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	107, 534
BspMI	ACCTGC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	522
BsrBI	CCGCTC	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	68, 77, 212, 547
BssMI	GATC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	3 cut(s)	68, 77, 212
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	3 cut(s)	324, 380, 507
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	168, 597
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	2 cut(s)	67, 522
BstMBI	GATC	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 173, 428
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	73, 102
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	16, 105
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	320, 335
CviAII	CATG	3 cut(s)	329, 423, 562
CviQI	GTAC	2 cut(s)	320, 335
DdeI	CTNAG	2 cut(s)	168, 597
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	3 cut(s)	68, 77, 212
Eco31I	GGTCTC	1 cut(s)	522
Eco32I	GATATC	2 cut(s)	238, 453
Eco47I	GGWCC	2 cut(s)	16, 105
Eco88I	CYCGRG	1 cut(s)	218
EcoRV	GATATC	2 cut(s)	238, 453
EcoT14I	CCWWGG	3 cut(s)	68, 77, 212
EcoT22I	ATGCAT	1 cut(s)	261
ErhI	CCWWGG	3 cut(s)	68, 77, 212
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	3 cut(s)	332, 426, 565
FaiI	YATR	9 cut(s)	330, 389, 414, 424, 440, 444, 460, 522, 563
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	328, 422, 561
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	54, 74, 544
Fsp4HI	GCNGC	3 cut(s)	54, 74, 544
FspBI	CTAG	3 cut(s)	293, 479, 491
GluI	GCNGC	3 cut(s)	54, 74, 544
HaeIII	GGCC	2 cut(s)	73, 102
HapII	CCGG	2 cut(s)	103, 547
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	332, 426, 565
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	3 cut(s)	139, 347, 475
HpaII	CCGG	2 cut(s)	103, 547
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	20, 161, 571
Hpy188III	TCNNGA	3 cut(s)	241, 499, 586
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	2 cut(s)	46, 380
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	3 cut(s)	324, 380, 507
HpyCH4V	TGCA	6 cut(s)	259, 316, 416, 422, 431, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 173, 428
HpyF3I	CTNAG	2 cut(s)	168, 597
Hsp92II	CATG	3 cut(s)	332, 426, 565
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	88, 250
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	246, 268
MaeI	CTAG	3 cut(s)	293, 479, 491
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	1 cut(s)	57
MfeI	CAATTG	1 cut(s)	417
MluCI	AATT	3 cut(s)	391, 397, 417
MlyI	GAGTC	2 cut(s)	356, 484
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	4 cut(s)	40, 165, 206, 506
Mph1103I	ATGCAT	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	103, 547
MspR9I	CCNGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	545
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	53, 173, 428
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	3 cut(s)	332, 426, 565
NlaIV	GGNNCC	2 cut(s)	107, 534
NsiI	ATGCAT	1 cut(s)	261
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	485
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	55, 75, 545
Ple19I	CGATCG	1 cut(s)	60
PleI	GAGTC	2 cut(s)	355, 483
PpsI	GAGTC	2 cut(s)	355, 483
PspN4I	GGNNCC	2 cut(s)	107, 534
PspPI	GGNCC	2 cut(s)	16, 105
PvuI	CGATCG	1 cut(s)	60
RsaI	GTAC	2 cut(s)	321, 336
RsaNI	GTAC	2 cut(s)	320, 335
RseI	CAYNNNNRTG	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	296
SatI	GCNGC	3 cut(s)	54, 74, 544
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	2 cut(s)	16, 105
SchI	GAGTC	2 cut(s)	356, 484
ScrFI	CCNGG	1 cut(s)	548
SfaNI	GCATC	2 cut(s)	246, 268
SfuI	TTCGAA	1 cut(s)	485
SinI	GGWCC	2 cut(s)	16, 105
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	391, 397, 417
SsiI	CCGC	2 cut(s)	53, 74
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	293, 479, 491
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	3 cut(s)	68, 77, 212
TaaI	ACNGT	3 cut(s)	324, 380, 507
TaqI	TCGA	3 cut(s)	297, 375, 485
TasI	AATT	3 cut(s)	391, 397, 417
TauI	GCSGC	2 cut(s)	56, 76
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	16, 105
XceI	RCATGY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	3 cut(s)	293, 479, 491
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.