Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

61121298 .. 61126290

Gene Structure 4993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCTGTCGGTGAGAGCGGCGATCGTCTCACCAAGGCCACCAAGGTCTTGGAGCAACTCAGCGGCAAGACCCCTGTTTTCTCCAAAGCTCGGTACACTGTGAGGTCTTTCGGAATCATGCGTAATGAGAAGATCGCTTGCTATGTTACTGTTAGGGGAGAGAAGGCAATGTCACTGTTGGAAAGTGGGCTGAAGGTGAAGGAGTATGAGCTTTTGTGTAAGAACTTCAGTGATACTGGCTGCTTTGGATTTGGTATTCAGGAGCATATCGATCTTGGAATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

107

Amino Acids

11.98

Weight (kDa)

9.38

Isoelectric Point (pI)

20.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 51	7.7e-18	Ribosomal protein L5
Ribosomal_L5_C	PF00673	56 - 105	1.2e-08	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	2 cut(s)	54, 99
AcuI	CTGAAG	2 cut(s)	247, 248
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	25, 125, 247
AluI	AGCT	3 cut(s)	25, 125, 247
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	58, 59, 244
AvaII	GGWCC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	55, 100, 277
BlsI	GCNGC	3 cut(s)	56, 101, 278
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	69, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	69, 78
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	58, 168, 307
BspACI	CCGC	2 cut(s)	54, 99
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	69, 78
BssMI	GATC	3 cut(s)	58, 168, 307
BssT1I	CCWWGG	2 cut(s)	69, 78
Bst4CI	ACNGT	3 cut(s)	136, 187, 213
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	95
BstKTI	GATC	3 cut(s)	61, 171, 310
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	3 cut(s)	58, 168, 307
BstMCI	CGRYCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	132, 209, 271
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	6 cut(s)	25, 74, 125, 226, 247, 276
CviKI_1	RGCY	6 cut(s)	25, 74, 125, 226, 247, 276
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	60, 170, 309
DpnII	GATC	3 cut(s)	58, 168, 307
Eco130I	CCWWGG	2 cut(s)	69, 78
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	247, 248
EcoT14I	CCWWGG	2 cut(s)	69, 78
ErhI	CCWWGG	2 cut(s)	69, 78
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	155, 180, 243, 303
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	55, 100, 277
Fsp4HI	GCNGC	3 cut(s)	55, 100, 277
GluI	GCNGC	3 cut(s)	55, 100, 277
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	1 cut(s)	150
HphI	GGTGA	3 cut(s)	58, 59, 244
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	19, 296
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	3 cut(s)	193, 223, 229
HpyCH4III	ACNGT	3 cut(s)	136, 187, 213
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	58, 168, 307
LmnI	GCTCC	2 cut(s)	88, 298
LpnPI	CCDG	4 cut(s)	32, 123, 258, 281
Lsp1109I	GCAGC	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	181, 207
MalI	GATC	3 cut(s)	60, 170, 309
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	3 cut(s)	58, 168, 307
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	41, 132
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	99
NdeII	GATC	3 cut(s)	58, 168, 307
NlaIII	CATG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	3 cut(s)	56, 101, 278
Ple19I	CGATCG	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	55, 100, 277
Sau3AI	GATC	3 cut(s)	58, 168, 307
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	7 cut(s)	18, 27, 84, 127, 143, 234, 249
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	54, 99
StyI	CCWWGG	2 cut(s)	69, 78
TaaI	ACNGT	3 cut(s)	136, 187, 213
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	315
TauI	GCSGC	2 cut(s)	57, 102
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	3 cut(s)	139, 216, 271
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	207
TspRI	CASTG	3 cut(s)	139, 216, 271
VpaK11BI	GGWCC	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.