Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

48514681 .. 48523755

Gene Structure 9075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCACCAAGTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGACATATGGCCTTGCAAACAAGCTGAACAAAGGATTGACCAAGCAGGACAAACCCCACAAATCTTCAAAATTCGTGTATGGAGAGGAACCCTCACCCTTGATGTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

77

Amino Acids

8.52

Weight (kDa)

8.96

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	34, 191
AgsI	TTSAA	3 cut(s)	22, 32, 189
AluBI	AGCT	2 cut(s)	117, 145
AluI	AGCT	2 cut(s)	117, 145
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	34, 191
AsuHPI	GGTGA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BsaBI	GATNNNNATC	1 cut(s)	79
BsaI	GGTCTC	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	108
BssMI	GATC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	113, 231
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	106
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviJI	RGCY	3 cut(s)	117, 132, 145
CviKI_1	RGCY	3 cut(s)	117, 132, 145
DdeI	CTNAG	2 cut(s)	113, 231
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	53
FaiI	YATR	5 cut(s)	85, 87, 127, 129, 201
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	2 cut(s)	85, 127
HaeIII	GGCC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	113, 231
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	57, 78, 103, 152
LweI	GCATC	1 cut(s)	89
MalI	GATC	1 cut(s)	42
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	133, 177
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	2 cut(s)	34, 191
MnlI	CCTC	2 cut(s)	199, 223
MspA1I	CMGCKG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeI	CATATG	2 cut(s)	85, 127
NdeII	GATC	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	40
SetI	ASST	2 cut(s)	119, 147
SfaNI	GCATC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	34, 191
SsiI	CCGC	1 cut(s)	106
TasI	AATT	2 cut(s)	34, 191
TfiI	GAWTC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	34, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.