Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

45735334 .. 45737228

Gene Structure 1895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTGAGAGTCTTCACTTTACTGAGGAGAGGAAATTTGAGGTCTGTTTTAGAGGAAATTTGAGGTCTGTTTTAGTGCAAAGTGTTTTAGAGTTGATGATGCGTGTGTGCTCGAGTGCATGTCATGGACCCATCACCATTTCTCACTTGCTCAAAACTTCAAAAGGACACTGTCCGCTATGGCTAATTCTAGCATTGACGAAGTTGCCTCAACTGGACCTGGTATTCGCTTGTTCCACCTCTATGTTTACTATGTCACCAACTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATAATTCTGGATTAGCATCATATGTTGCTGGACTATTTGACCGCTCTTTTAGTGGGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

126

Amino Acids

14.02

Weight (kDa)

6.89

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	360
AciI	CCGC	2 cut(s)	176, 358
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	35, 58, 286
AgsI	TTSAA	3 cut(s)	162, 274, 284
AjnI	CCWGG	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	112
ApoI	RAATTY	3 cut(s)	35, 58, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	2 cut(s)	128, 217
AsuHPI	GGTGA	2 cut(s)	127, 249
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	128, 217
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	113
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	2 cut(s)	128, 217
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	128, 217
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	90, 341
BpiI	GAAGAC	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	176, 358
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	173
BstDEI	CTNAG	2 cut(s)	6, 24
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	128, 217
CsiI	ACCWGGT	1 cut(s)	219
CviAII	CATG	2 cut(s)	120, 125
CviJI	RGCY	2 cut(s)	5, 184
CviKI_1	RGCY	2 cut(s)	5, 184
DdeI	CTNAG	2 cut(s)	6, 24
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	128, 217
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	123, 128
FaiI	YATR	7 cut(s)	121, 126, 181, 245, 254, 337, 339
FatI	CATG	2 cut(s)	119, 124
FauNDI	CATATG	1 cut(s)	337
FspBI	CTAG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	123, 128
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	2 cut(s)	127, 249
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	79, 119
HpyF3I	CTNAG	2 cut(s)	6, 24
Hsp92II	CATG	2 cut(s)	123, 128
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	5 cut(s)	200, 206, 233, 309, 330
LweI	GCATC	2 cut(s)	90, 341
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	294
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	5
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	5 cut(s)	35, 58, 186, 286, 319
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	19, 24, 34, 47, 57, 219, 250
MslI	CAYNNNNRTG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	123, 128
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	112
PflFI	GACNNNGTC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	2 cut(s)	128, 217
PspXI	VCTCGAGB	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	2 cut(s)	128, 217
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	4 cut(s)	45, 68, 222, 242
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	2 cut(s)	90, 341
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	128, 217
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	35, 58, 186, 286, 319
SsiI	CCGC	2 cut(s)	176, 358
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	113
TasI	AATT	5 cut(s)	35, 58, 186, 286, 319
TscAI	CASTG	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspRI	CASTG	1 cut(s)	176
Tth111I	GACNNNGTC	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	128, 217
XapI	RAATTY	3 cut(s)	35, 58, 286
XceI	RCATGY	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.