Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

4765962 .. 4770747

Gene Structure 4786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0062900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGATGCAGCGACTCGTCGACAACGCCATCGCTGTCACCAAAGAGTCAGTGAAGACGTTTACGTATGAATCGCTGAACAATATTGTGAGATTCATCAATGGAGTTTCGGCTCTGCTGTTGGCGTTATTGCCAGGTAAGGCTAATATCCTTGAAGGCATACATGGCTGGGAGCTCAGGCCTACCTTTCGTGGACCTCGATTTCCTCGCTGGATGGAAAATGGGGTGTCCTCTTTCAATCAATTCATACATGAGCTTTCTGTGGATTCTGATTCCGAGGGTTCGAGCGTGAGCATAGACTATGGGGAAGAATATAGTGATGAAGACATATGTCCTGCATCCCCATCTTCTCAAAGTTCAAGAGTCTCCAGGTCTTATAGTATCCCTAGGCAATGGACAGGGTGGATGTGGATCAGATACATATTTTATTGGATTCTGTTTCCTGCAAGGTTCCTGCTTGGCCTTCCGGGGCTGCTTTGCCGTTCTTGTTATAATAAGAGCGCGACACCCTCTTCTGCACCAGGTCGCAGTCAGCTTTCGCACAGGACTAGTTCTTTGAATAGAGTGCAGTTCCTCAAGGATCACATTATTCAGCGCACTACTGATAGGAGACGTGGAGTCATTGAGGATCTTCATCTAGCGATTGAGATATTCATAGAAGCTGTATTCGATGTTGTTTATAAAGCAGCTCATTTTGTTCTTTCCCCATTTGATGCTCTTAGAACACTATTTGGGTGGTTTTCATCAAACAACAACAGAGTTCAAGATACTCATGGTAGTGCTTCAGATGCTTCTGTTCCCACAGCTACACTTGGAGATGATGATCCAGTTCCTACAGAAAGGAACACTTCGTTTCAGGCGCTAAATACTGATGCTCGAACATGCCAGGATGTCATTACAGAGCTTGGGTATCCATACGAAGCTATTCATGTGATCACTAGTGATGGATATGTTCTTCTCTTGGAAAGAATCCCAAGACGTGATTCACGAAAAGCTGTTTATCTGCAACATGGAATTCTGGATTCATCTATGGGTTGGGTGTCCAATGGGGTTGTCGGTTCACCTGCATTTGCCGCCTATGATCAAGGATATGATGTCTTCCTCGGGAACTTTCGTGGCTTGGTTTCTAGGGAGCACGTTGACAAAAGCATTTCCTCACGACAGTACTGGCAGTACTCAATCAATGAGCATGGGACTCAGGATATTCCTGCAATGATAGAGAAGATCCACCAAGTTAAAACTGCAGAATTGAAGCTTAGTCAACCTGATATTGAGGAAGAAACCAATGGTGATCAACCTTATAAGCTTTGTGCAATTTGCCATAGCTTGGGAGGAGCAGCTATATTAATGTATGTTGTAACACAGAGGATAGAAGAGAAACCCCACAGACTCTCGAGATTGATTTTATTATCACCTGCTGGCTTCCATGAAGATTCTTCCTTTATGTTTTCGGTCGTGGAATACTCCTTTCTTCTATTGGCTCCCCTTCTGCAACCCTTTGTTCCTGGCATCTATATACCAACCAAATTCTTTCGCATGCTTCTAAACAAGTTGGCACGGGACTTCCATAATTACCCTGCTGTTGGAGGATTGGTTCAGACACTGATGAGTTATTTTGTAGGTGGAGATAGCTCAAATTGGGTTGGTGTGTTGGGCCTACCACATTATAACATGAATGACATGCCGGGGGTATCGTTCCAAGTGGCTCTCCATCTTGCACAAATGAAGCGTGCAAAAAGGTTTAGGATGTTTGATTATGGGAGAGCTTCTGCTAATATGGAGGTTTATGGATCTCCAGAGCCATTAGACTTGGGAGAGTACTATAGGCTCATTGATATTCCGGTTGATCTGGTTGCTGGACGTAAGGACAAGGTAATTAGGCCATCAATGGTAAAGAAGCATTATAAGGTGATGAAGAATTCAGGTGTAAATGCATCATACAATGAGTTTGAGTATGCACATTTAGACTTCACATTTTCCCACCGTGAAGAACTCTTGGCATATGTCAAGTCACGCCTCTTGCTTGTGGAGCCGCCTCCAAAGCAGTCCAGCCCGAAGGGTCTAAAGCTAAAGAAGAAAGGACAGCAGGTTAATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0015935 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

698

Amino Acids

78.93

Weight (kDa)

7.7

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	295 - 349	7.3e-15	Partial alpha/beta-hydrolase lipase region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	489, 678, 1299, 1665, 1902
AarI	CACCTGC	2 cut(s)	1069, 1420
Acc36I	ACCTGC	3 cut(s)	1069, 1420, 2074
AccB7I	CCANNNNNTGG	1 cut(s)	1324
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	500
AciI	CCGC	2 cut(s)	1071, 2030
AclWI	GGATC	6 cut(s)	416, 585, 633, 815, 1216, 1795
AcsI	RAATTY	3 cut(s)	1011, 1523, 1915
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	3 cut(s)	1163, 1172, 1817
AfiI	CCNNNNNNNGG	2 cut(s)	1324, 1580
AgsI	TTSAA	6 cut(s)	152, 235, 357, 556, 761, 1249
AhdI	GACNNNNNGTC	1 cut(s)	614
AhlI	ACTAGT	2 cut(s)	545, 935
AjiI	CACGTC	2 cut(s)	611, 977
AjnI	CCWGG	5 cut(s)	130, 365, 517, 882, 1501
AjuI	GAANNNNNNNTTGG	2 cut(s)	964, 996
AloI	GAACNNNNNNTCC	2 cut(s)	1575, 1607
Alw21I	GWGCWC	2 cut(s)	174, 1134
Alw26I	GTCTC	2 cut(s)	367, 601
AlwI	GGATC	6 cut(s)	416, 585, 633, 815, 1216, 1795
AlwNI	CAGNNNCTG	1 cut(s)	1600
Ama87I	CYCGRG	2 cut(s)	1100, 1390
AoxI	GGCC	4 cut(s)	176, 457, 1651, 1877
ApeKI	GCWGC	4 cut(s)	7, 469, 683, 1334
ApoI	RAATTY	3 cut(s)	1011, 1523, 1915
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AseI	ATTAAT	1 cut(s)	1343
Asp700I	GAANNNNTTC	1 cut(s)	921
AspA2I	CCTAGG	1 cut(s)	383
AspLEI	GCGC	3 cut(s)	500, 594, 859
AspS9I	GGNCC	2 cut(s)	191, 1651
AsuC2I	CCSGG	2 cut(s)	465, 1683
AsuHPI	GGTGA	5 cut(s)	28, 1050, 1298, 1401, 1918
AvaI	CYCGRG	2 cut(s)	1100, 1390
AvaII	GGWCC	1 cut(s)	191
AvrII	CCTAGG	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	59, 327, 1087
Bbv12I	GWGCWC	2 cut(s)	174, 1134
BbvI	GCAGC	4 cut(s)	19, 456, 695, 1346
BccI	CCATC	6 cut(s)	35, 205, 349, 935, 1716, 1888
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	5 cut(s)	132, 367, 519, 884, 1503
BciVI	GTATCC	2 cut(s)	389, 918
BclI	TGATCA	3 cut(s)	930, 1078, 1288
BcnI	CCSGG	2 cut(s)	465, 1683
BcoDI	GTCTC	2 cut(s)	367, 601
BcuI	ACTAGT	2 cut(s)	545, 935
BfaI	CTAG	5 cut(s)	384, 546, 635, 936, 1125
BfmI	CTRYAG	3 cut(s)	831, 1239, 1819
BfoI	RGCGCY	1 cut(s)	860
BfuAI	ACCTGC	3 cut(s)	1069, 1420, 2074
BfuI	GTATCC	2 cut(s)	389, 918
BisI	GCNGC	6 cut(s)	8, 470, 684, 1071, 1335, 2030
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	6 cut(s)	9, 471, 685, 1072, 1336, 2031
BmcAI	AGTACT	3 cut(s)	1163, 1172, 1817
Bme1390I	CCNGG	7 cut(s)	132, 367, 465, 519, 884, 1503, 1683
Bme18I	GGWCC	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	614
BmeT110I	CYCGRG	2 cut(s)	1100, 1390
BmgBI	CACGTC	2 cut(s)	611, 977
BmgT120I	GGNCC	2 cut(s)	191, 1651
BmiI	GGNNCC	3 cut(s)	449, 1479, 2028
BmrFI	CCNGG	7 cut(s)	132, 367, 465, 519, 884, 1503, 1683
BmsI	GCATC	6 cut(s)	344, 700, 775, 859, 1515, 1940
BoxI	GACNNNNGTC	1 cut(s)	327
BpiI	GAAGAC	3 cut(s)	59, 327, 1087
BpmI	CTGGAG	2 cut(s)	349, 1776
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	465, 1683
BsaAI	YACGTR	1 cut(s)	63
BsaBI	GATNNNNATC	3 cut(s)	407, 630, 819
BsaJI	CCNNGG	5 cut(s)	273, 383, 464, 1099, 1682
BsaWI	WCCGGW	1 cut(s)	1837
BsaXI	ACNNNNNCTCC	2 cut(s)	1575, 1605
Bsc4I	CCNNNNNNNGG	2 cut(s)	1324, 1580
Bse1I	ACTGG	2 cut(s)	824, 1169
Bse3DI	GCAATG	2 cut(s)	395, 1215
Bse8I	GATNNNNATC	3 cut(s)	407, 630, 819
BseBI	CCWGG	5 cut(s)	132, 367, 519, 884, 1503
BseDI	CCNNGG	5 cut(s)	273, 383, 464, 1099, 1682
BseGI	GGATG	5 cut(s)	216, 335, 408, 892, 1749
BseJI	GATNNNNATC	3 cut(s)	407, 630, 819
BseLI	CCNNNNNNNGG	2 cut(s)	1324, 1580
BseMI	GCAATG	2 cut(s)	395, 1215
BseMII	CTCAG	2 cut(s)	187, 1208
BseNI	ACTGG	2 cut(s)	824, 1169
BseRI	GAGGAG	1 cut(s)	1344
BseXI	GCAGC	4 cut(s)	19, 456, 695, 1346
BseYI	CCCAGC	1 cut(s)	165
BsgI	GTGCAG	2 cut(s)	498, 584
Bsh1236I	CGCG	1 cut(s)	500
Bsh1285I	CGRYCG	1 cut(s)	1452
BshFI	GGCC	4 cut(s)	178, 459, 1653, 1879
BsiEI	CGRYCG	1 cut(s)	1452
BsiHKAI	GWGCWC	2 cut(s)	174, 1134
BsiHKCI	CYCGRG	2 cut(s)	1100, 1390
BsiSI	CCGG	3 cut(s)	464, 1682, 1838
BslFI	GGGAC	2 cut(s)	1204, 1571
BslI	CCNNNNNNNGG	2 cut(s)	1324, 1580
BsmAI	GTCTC	2 cut(s)	367, 601
BsmBI	CGTCTC	1 cut(s)	601
BsmFI	GGGAC	2 cut(s)	1204, 1571
BsnI	GGCC	4 cut(s)	178, 459, 1653, 1879
BsoBI	CYCGRG	2 cut(s)	1100, 1390
Bsp1286I	GDGCHC	2 cut(s)	174, 1134
BspACI	CCGC	2 cut(s)	1071, 2030
BspANI	GGCC	4 cut(s)	178, 459, 1653, 1879
BspCNI	CTCAG	2 cut(s)	186, 1207
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	449, 1479, 2028
BspMAI	CTGCAG	1 cut(s)	1243
BspMI	ACCTGC	3 cut(s)	1069, 1420, 2074
BspPI	GGATC	6 cut(s)	416, 585, 633, 815, 1216, 1795
BsrDI	GCAATG	2 cut(s)	395, 1215
BsrI	ACTGG	2 cut(s)	824, 1169
BssECI	CCNNGG	5 cut(s)	273, 383, 464, 1099, 1682
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	5 cut(s)	132, 367, 519, 884, 1503
Bst4CI	ACNGT	2 cut(s)	1161, 1982
Bst6I	CTCTTC	2 cut(s)	514, 1365
BstBAI	YACGTR	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	1417, 1535, 1728
BstDEI	CTNAG	4 cut(s)	173, 716, 1194, 1253
BstF5I	GGATG	5 cut(s)	216, 335, 408, 892, 1749
BstFNI	CGCG	1 cut(s)	500
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	3 cut(s)	500, 594, 859
BstMAI	GTCTC	2 cut(s)	367, 601
BstMCI	CGRYCG	1 cut(s)	1452
BstMWI	GCNNNNNNNGC	5 cut(s)	162, 785, 1070, 2026, 2038
BstNI	CCWGG	5 cut(s)	132, 367, 519, 884, 1503
BstNSI	RCATGY	3 cut(s)	882, 1537, 1681
BstPAI	GACNNNNGTC	1 cut(s)	327
BstSCI	CCNGG	7 cut(s)	130, 365, 463, 517, 882, 1501, 1681
BstSFI	CTRYAG	3 cut(s)	831, 1239, 1819
BstSNI	TACGTA	1 cut(s)	63
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	4 cut(s)	19, 456, 695, 1346
BstV2I	GAAGAC	3 cut(s)	59, 327, 1087
BstX2I	RGATCY	3 cut(s)	625, 1221, 1787
BstYI	RGATCY	3 cut(s)	625, 1221, 1787
BsuI	GTATCC	2 cut(s)	389, 918
BsuRI	GGCC	4 cut(s)	178, 459, 1653, 1879
BtgZI	GCGATG	1 cut(s)	13
BtrI	CACGTC	2 cut(s)	611, 977
BtsCI	GGATG	5 cut(s)	216, 335, 408, 892, 1749
BtsIMutI	CAGTG	2 cut(s)	54, 1598
BveI	ACCTGC	3 cut(s)	1069, 1420, 2074
Cac8I	GCNNGC	3 cut(s)	1417, 1535, 1728
CaiI	CAGNNNCTG	1 cut(s)	1600
CfoI	GCGC	3 cut(s)	500, 594, 859
Cfr13I	GGNCC	2 cut(s)	191, 1651
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	1162, 1171, 1816
CviQI	GTAC	3 cut(s)	1162, 1171, 1816
DdeI	CTNAG	4 cut(s)	173, 716, 1194, 1253
DriI	GACNNNNNGTC	1 cut(s)	614
Eam1104I	CTCTTC	2 cut(s)	514, 1365
Eam1105I	GACNNNNNGTC	1 cut(s)	614
EarI	CTCTTC	2 cut(s)	514, 1365
Ecl136II	GAGCTC	1 cut(s)	172
Eco105I	TACGTA	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	2 cut(s)	1100, 1390
EcoICRI	GAGCTC	1 cut(s)	172
EcoRI	GAATTC	2 cut(s)	1011, 1915
EcoRII	CCWGG	5 cut(s)	130, 365, 517, 882, 1501
EcoT14I	CCWWGG	1 cut(s)	383
EcoT22I	ATGCAT	1 cut(s)	1933
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	601
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	2 cut(s)	1204, 1571
FauNDI	CATATG	2 cut(s)	326, 1999
FbaI	TGATCA	3 cut(s)	930, 1078, 1288
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	8, 470, 684, 1071, 1335, 2030
FokI	GGATG	5 cut(s)	223, 322, 415, 899, 1756
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	6 cut(s)	8, 470, 684, 1071, 1335, 2030
FspBI	CTAG	5 cut(s)	384, 546, 635, 936, 1125
GlaI	GCGC	3 cut(s)	499, 593, 858
GluI	GCNGC	6 cut(s)	8, 470, 684, 1071, 1335, 2030
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	349, 1776
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	4 cut(s)	178, 459, 1653, 1879
HapII	CCGG	3 cut(s)	464, 1682, 1838
HhaI	GCGC	3 cut(s)	500, 594, 859
Hin6I	GCGC	3 cut(s)	498, 592, 857
HinP1I	GCGC	3 cut(s)	498, 592, 857
HincII	GTYRAC	3 cut(s)	19, 1138, 1259
HindII	GTYRAC	3 cut(s)	19, 1138, 1259
HindIII	AAGCTT	2 cut(s)	1250, 1301
HpaII	CCGG	3 cut(s)	464, 1682, 1838
HphI	GGTGA	5 cut(s)	28, 1050, 1298, 1401, 1918
Hpy166II	GTNNAC	6 cut(s)	19, 60, 191, 1058, 1138, 1259
Hpy188I	TCNGA	5 cut(s)	268, 274, 413, 784, 1596
Hpy8I	GTNNAC	6 cut(s)	19, 60, 191, 1058, 1138, 1259
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	146, 470, 1493, 2047
HpyCH4III	ACNGT	2 cut(s)	1161, 1982
HpyCH4IV	ACGT	6 cut(s)	56, 62, 610, 976, 1134, 1858
HpyF10VI	GCNNNNNNNGC	5 cut(s)	162, 785, 1070, 2026, 2038
HpyF3I	CTNAG	4 cut(s)	173, 716, 1194, 1253
HpySE526I	ACGT	6 cut(s)	56, 62, 610, 976, 1134, 1858
HspAI	GCGC	3 cut(s)	498, 592, 857
Ksp22I	TGATCA	3 cut(s)	930, 1078, 1288
LmnI	GCTCC	5 cut(s)	169, 1129, 1331, 1483, 2026
Lsp1109I	GCAGC	4 cut(s)	19, 456, 695, 1346
LweI	GCATC	6 cut(s)	344, 700, 775, 859, 1515, 1940
MabI	ACCWGGT	1 cut(s)	517
MaeI	CTAG	5 cut(s)	384, 546, 635, 936, 1125
MaeII	ACGT	6 cut(s)	56, 62, 610, 976, 1134, 1858
MaeIII	GTNAC	3 cut(s)	34, 1354, 2007
MflI	RGATCY	3 cut(s)	625, 1221, 1787
MhlI	GDGCHC	2 cut(s)	174, 1134
MluCI	AATT	9 cut(s)	239, 1011, 1244, 1311, 1523, 1567, 1633, 1872, 1915
MlyI	GAGTC	6 cut(s)	6, 53, 369, 624, 1186, 1380
MmeI	TCCRAC	1 cut(s)	1561
Mph1103I	ATGCAT	1 cut(s)	1933
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	4 cut(s)	1233, 1343, 2088, 2095
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	3 cut(s)	464, 1682, 1838
MspR9I	CCNGG	7 cut(s)	132, 367, 465, 519, 884, 1503, 1683
MvaI	CCWGG	5 cut(s)	132, 367, 519, 884, 1503
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	5 cut(s)	162, 785, 1070, 2026, 2038
NciI	CCSGG	2 cut(s)	465, 1683
NdeI	CATATG	2 cut(s)	326, 1999
NlaIV	GGNNCC	3 cut(s)	449, 1479, 2028
NmuCI	GTSAC	2 cut(s)	34, 2007
NsiI	ATGCAT	1 cut(s)	1933
NspI	RCATGY	3 cut(s)	882, 1537, 1681
PaeI	GCATGC	1 cut(s)	1537
PaeR7I	CTCGAG	1 cut(s)	1390
PaqCI	CACCTGC	2 cut(s)	1069, 1420
PceI	AGGCCT	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 982
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	9 cut(s)	68, 90, 263, 269, 430, 966, 980, 1019, 1430
PflMI	CCANNNNNTGG	1 cut(s)	1324
PkrI	GCNGC	6 cut(s)	9, 471, 685, 1072, 1336, 2031
PleI	GAGTC	6 cut(s)	6, 52, 368, 623, 1186, 1380
PpsI	GAGTC	6 cut(s)	6, 52, 368, 623, 1186, 1380
Ppu21I	YACGTR	1 cut(s)	63
PshAI	GACNNNNGTC	1 cut(s)	327
PshBI	ATTAAT	1 cut(s)	1343
PsiI	TTATAA	5 cut(s)	489, 678, 1299, 1665, 1902
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	5 cut(s)	130, 365, 517, 882, 1501
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	5 cut(s)	130, 365, 517, 882, 1501
PspN4I	GGNNCC	3 cut(s)	449, 1479, 2028
PspPI	GGNCC	2 cut(s)	191, 1651
PstI	CTGCAG	1 cut(s)	1243
PstNI	CAGNNNCTG	1 cut(s)	1600
PsuI	RGATCY	3 cut(s)	625, 1221, 1787
RsaI	GTAC	3 cut(s)	1163, 1172, 1817
RsaNI	GTAC	3 cut(s)	1162, 1171, 1816
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	1233, 1343, 2088, 2095
SatI	GCNGC	6 cut(s)	8, 470, 684, 1071, 1335, 2030
Sau96I	GGNCC	2 cut(s)	191, 1651
ScaI	AGTACT	3 cut(s)	1163, 1172, 1817
SchI	GAGTC	6 cut(s)	6, 53, 369, 624, 1186, 1380
ScrFI	CCNGG	7 cut(s)	132, 367, 465, 519, 884, 1503, 1683
SduI	GDGCHC	2 cut(s)	174, 1134
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	6 cut(s)	344, 700, 775, 859, 1515, 1940
SfcI	CTRYAG	3 cut(s)	831, 1239, 1819
Sfr274I	CTCGAG	1 cut(s)	1390
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	1390
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	2 cut(s)	572, 1390
SmoI	CTYRAG	2 cut(s)	572, 1390
SnaBI	TACGTA	1 cut(s)	63
SpeI	ACTAGT	2 cut(s)	545, 935
SphI	GCATGC	1 cut(s)	1537
Sse9I	AATT	9 cut(s)	239, 1011, 1244, 1311, 1523, 1567, 1633, 1872, 1915
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	1071, 2030
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	5 cut(s)	384, 546, 635, 936, 1125
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	7 cut(s)	130, 365, 463, 517, 882, 1501, 1681
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	1161, 1982
TaiI	ACGT	6 cut(s)	59, 65, 613, 979, 1137, 1861
TaqI	TCGA	6 cut(s)	18, 196, 281, 666, 874, 1391
TaqII	GACCGA	1 cut(s)	1438
TasI	AATT	9 cut(s)	239, 1011, 1244, 1311, 1523, 1567, 1633, 1872, 1915
TatI	WGTACW	3 cut(s)	1161, 1170, 1815
TauI	GCSGC	2 cut(s)	1073, 2032
TfiI	GAWTC	9 cut(s)	68, 90, 263, 269, 430, 966, 980, 1019, 1430
Tru1I	TTAA	4 cut(s)	1233, 1343, 2088, 2095
Tru9I	TTAA	4 cut(s)	1233, 1343, 2088, 2095
TscAI	CASTG	2 cut(s)	54, 1605
TseFI	GTSAC	2 cut(s)	34, 2007
TseI	GCWGC	4 cut(s)	7, 469, 683, 1334
Tsp45I	GTSAC	2 cut(s)	34, 2007
TspRI	CASTG	2 cut(s)	54, 1605
Van91I	CCANNNNNTGG	1 cut(s)	1324
VpaK11BI	GGWCC	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	1343
XapI	RAATTY	3 cut(s)	1011, 1523, 1915
XceI	RCATGY	3 cut(s)	882, 1537, 1681
XhoI	CTCGAG	1 cut(s)	1390
XmaJI	CCTAGG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	5 cut(s)	384, 546, 635, 936, 1125
ZrmI	AGTACT	3 cut(s)	1163, 1172, 1817
Zsp2I	ATGCAT	1 cut(s)	1933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.