Rh6BG116800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000887
Physical Location & Seq
Forward (+)
18064018 .. 18070323
6306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG116800.1

Sequence Viewer

Length: 378 bp
ATGGACGTTGGTGGGACTGGATTTGTGGCGGCTGATGAAGATGTGTGGAGTTTCCCGGGTTTACTCTGCGCGATCAATGCGAGTTCCAAAGATGCAGAAGCTAAGGTTTCCGAGCATGAGGAGCTTGGATCAGGTCAAGTCCCTCTTCAAATCGGTCTCAGGAGGACCTCCAAAAGACCTTCGCCTACTCTTCACGTCCGCCGGAGTCGACCTTGTTGGGATGCTTGGCGTCATGCTTCAACGCGAGACCATGGAGAAGCTCTAGCGATAATACAATCAGGAAAAGTTGGATGGGTGGAGAGGGATGACAATATGTGGTGGGTTGAGCACAAAATATTGGTTCAGAATCGAAAGGAAAGGAAACATGAAGGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

7.02

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 208
AccII CGCG 2 cut(s) 71, 244
AciI CCGC 2 cut(s) 29, 199
AclWI GGATC 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 229
AgsI TTSAA 2 cut(s) 149, 240
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 3 cut(s) 101, 124, 260
AluI AGCT 3 cut(s) 101, 124, 260
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 161, 240
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 55
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 2 cut(s) 56, 57
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 330
BccI CCATC 1 cut(s) 285
BcnI CCSGG 2 cut(s) 56, 57
BcoDI GTCTC 2 cut(s) 161, 240
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 56, 57
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 56, 57
BmsI GCATC 2 cut(s) 82, 211
Bpu10I CCTNAGC 1 cut(s) 102
BpuMI CCSGG 2 cut(s) 56, 57
BsaHI GRCGYC 1 cut(s) 229
BsaI GGTCTC 2 cut(s) 161, 240
BsaJI CCNNGG 2 cut(s) 55, 250
Bse1I ACTGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 55, 250
BseGI GGATG 3 cut(s) 226, 296, 310
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 134
Bsh1236I CGCG 2 cut(s) 71, 244
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 56, 202
BslFI GGGAC 2 cut(s) 28, 125
BsmAI GTCTC 2 cut(s) 161, 240
BsmFI GGGAC 2 cut(s) 28, 125
Bso31I GGTCTC 2 cut(s) 161, 240
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 72, 128
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 2 cut(s) 29, 199
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 2 cut(s) 71, 244
BspPI GGATC 1 cut(s) 136
BspTNI GGTCTC 2 cut(s) 161, 240
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 55, 250
BssMI GATC 2 cut(s) 72, 128
BssNI GRCGYC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 150, 195
BstACI GRCGYC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 102, 158
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 3 cut(s) 226, 296, 310
BstFNI CGCG 2 cut(s) 71, 244
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 75, 131
BstMAI GTCTC 2 cut(s) 161, 240
BstMBI GATC 2 cut(s) 72, 128
BstMWI GCNNNNNNNGC 2 cut(s) 77, 121
BstSCI CCNGG 2 cut(s) 54, 55
BstUI CGCG 2 cut(s) 71, 244
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 3 cut(s) 226, 296, 310
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 165
Cfr9I CCCGGG 1 cut(s) 55
CseI GACGC 1 cut(s) 218
CviAII CATG 4 cut(s) 116, 233, 251, 365
CviJI RGCY 4 cut(s) 32, 101, 124, 260
CviKI_1 RGCY 4 cut(s) 32, 101, 124, 260
DdeI CTNAG 2 cut(s) 102, 158
DpnI GATC 2 cut(s) 74, 130
DpnII GATC 2 cut(s) 72, 128
Eam1104I CTCTTC 2 cut(s) 150, 195
EarI CTCTTC 2 cut(s) 150, 195
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 2 cut(s) 161, 240
Eco47I GGWCC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 119, 236, 254, 368
FaiI YATR 7 cut(s) 117, 234, 252, 314, 366, 374, 376
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 28, 125
FatI CATG 4 cut(s) 115, 232, 250, 364
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 3 cut(s) 233, 303, 317
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 30
HapII CCGG 2 cut(s) 56, 202
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 4 cut(s) 119, 236, 254, 368
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HinfI GANTC 2 cut(s) 205, 346
HpaII CCGG 2 cut(s) 56, 202
Hpy166II GTNNAC 2 cut(s) 62, 209
Hpy188I TCNGA 2 cut(s) 112, 345
Hpy188III TCNNGA 2 cut(s) 160, 279
Hpy8I GTNNAC 2 cut(s) 62, 209
HpyAV CCTTC 2 cut(s) 189, 362
HpyCH4IV ACGT 2 cut(s) 6, 195
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 121
HpyF3I CTNAG 2 cut(s) 102, 158
HpySE526I ACGT 2 cut(s) 6, 195
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 4 cut(s) 119, 236, 254, 368
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 72, 128
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 3, 69, 117, 145, 215, 264
LweI GCATC 2 cut(s) 82, 211
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 6, 195
MalI GATC 2 cut(s) 74, 130
MboI GATC 2 cut(s) 72, 128
MboII GAAGA 3 cut(s) 50, 137, 182
MhlI GDGCHC 1 cut(s) 330
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 5 cut(s) 112, 153, 156, 178, 294
MspI CCGG 2 cut(s) 56, 202
MspR9I CCNGG 2 cut(s) 56, 57
MvnI CGCG 2 cut(s) 71, 244
MwoI GCNNNNNNNGC 2 cut(s) 77, 121
NciI CCSGG 2 cut(s) 56, 57
NcoI CCATGG 1 cut(s) 250
NdeII GATC 2 cut(s) 72, 128
NlaIII CATG 4 cut(s) 119, 236, 254, 368
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 165
PspPI GGNCC 1 cut(s) 165
PspPPI RGGWCCY 1 cut(s) 165
SalI GTCGAC 1 cut(s) 207
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 72, 128
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 56, 57
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 2 cut(s) 82, 211
SinI GGWCC 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 57
SsiI CCGC 2 cut(s) 29, 199
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 54, 55
StyI CCWWGG 1 cut(s) 250
TaiI ACGT 2 cut(s) 9, 198
TaqI TCGA 2 cut(s) 208, 349
TaqII GACCGA 1 cut(s) 143
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 51
TspMI CCCGGG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 165
XmaI CCCGGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 208
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.