Rh6DG144500

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000887
Physical Location & Seq
Reverse (-)
20812058 .. 20844654
32597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG144500.1

Sequence Viewer

Length: 489 bp
ATGGATGTATTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCGTCCTTTTGGTCTCATAAACCCGTGGAACCTGAATATGATGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATGGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAAGCTCACCACAATATCAACCATCAAAGTCGGAGTAGAAAAGAGTAGAGGAAGAATTGGGGAACAATTTATTAGCTATTATTGCAGCAAACCAACCCTTCAAATTTCTTGCGACAATCACATTCATTCTAAGAGCCTTTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

162

Amino Acids

18.27

Weight (kDa)

7.77

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 2 cut(s) 147, 329
AcyI GRCGYC 1 cut(s) 272
AfaI GTAC 1 cut(s) 321
AgsI TTSAA 4 cut(s) 13, 57, 443, 484
AluBI AGCT 4 cut(s) 95, 161, 346, 417
AluI AGCT 4 cut(s) 95, 161, 346, 417
Alw26I GTCTC 2 cut(s) 201, 279
ApeKI GCWGC 3 cut(s) 77, 158, 426
ApoI RAATTY 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 64, 170, 438
BccI CCATC 4 cut(s) 41, 218, 262, 371
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 201, 279
BfaI CTAG 2 cut(s) 135, 171
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 3 cut(s) 78, 159, 427
BlsI GCNGC 3 cut(s) 79, 160, 428
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 213, 315
BmsI GCATC 4 cut(s) 88, 110, 290, 313
BsaHI GRCGYC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 64, 170, 438
BsmAI GTCTC 2 cut(s) 201, 279
BsmBI CGTCTC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 213, 315
BspTNI GGTCTC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 186, 332
BstACI GRCGYC 1 cut(s) 272
BstDEI CTNAG 3 cut(s) 82, 276, 471
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 201, 279
BstMWI GCNNNNNNNGC 2 cut(s) 278, 423
BstV1I GCAGC 3 cut(s) 64, 170, 438
BsuI GTATCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 320
CviAII CATG 1 cut(s) 241
CviJI RGCY 5 cut(s) 95, 161, 346, 417, 477
CviKI_1 RGCY 5 cut(s) 95, 161, 346, 417, 477
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 3 cut(s) 82, 276, 471
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 147, 329
EcoO109I RGGNCCY 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 1 cut(s) 244
FaiI YATR 6 cut(s) 23, 61, 201, 222, 242, 262
FatI CATG 1 cut(s) 240
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 78, 159, 427
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 78, 159, 427
FspBI CTAG 2 cut(s) 135, 171
GluI GCNGC 3 cut(s) 78, 159, 427
HgaI GACGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 29, 140
Hpy188I TCNGA 6 cut(s) 118, 166, 250, 309, 338, 374
Hpy8I GTNNAC 2 cut(s) 29, 140
HpyAV CCTTC 2 cut(s) 304, 449
HpyCH4III ACNGT 2 cut(s) 186, 332
HpyCH4V TGCA 3 cut(s) 101, 158, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 423
HpyF3I CTNAG 3 cut(s) 82, 276, 471
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 244
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 5 cut(s) 57, 189, 228, 263, 330
Lsp1109I GCAGC 3 cut(s) 64, 170, 438
LweI GCATC 4 cut(s) 88, 110, 290, 313
MaeI CTAG 2 cut(s) 135, 171
MboII GAAGA 2 cut(s) 25, 405
MluCI AATT 4 cut(s) 324, 396, 407, 444
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 273, 352
MnlI CCTC 2 cut(s) 82, 383
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 2 cut(s) 153, 327
MslI CAYNNNNRTG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 278, 423
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 213, 315
NsiI ATGCAT 1 cut(s) 103
PkrI GCNGC 3 cut(s) 79, 160, 428
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 213, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 153, 327
SatI GCNGC 3 cut(s) 78, 159, 427
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 34
SetI ASST 8 cut(s) 97, 136, 163, 178, 217, 255, 348, 419
SfaNI GCATC 4 cut(s) 88, 110, 290, 313
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 4 cut(s) 324, 396, 407, 444
SspMI CTAG 2 cut(s) 135, 171
TaaI ACNGT 2 cut(s) 186, 332
TaqI TCGA 1 cut(s) 139
TasI AATT 4 cut(s) 324, 396, 407, 444
Tru1I TTAA 2 cut(s) 153, 327
Tru9I TTAA 2 cut(s) 153, 327
TseI GCWGC 3 cut(s) 77, 158, 426
TspDTI ATGAA 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 444
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 2 cut(s) 135, 171
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.