Rw2G031950

peroxisomal (S)-2-hydroxy-acid oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000887
Physical Location & Seq
Reverse (-)
52605178 .. 52606995
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031950.1

Sequence Viewer

Length: 360 bp
ATGGCCGAGAGTCTTCACTTTACTGAGGAGAGGAAATTTGAGGTCTGTTTTAGTGCAAAGTGTTTCAGAGTTGATGATGTGTGTGTGCTGAGTGCGTGTCATGGACCCATCACCATTTCTCACTTGCTCAAAACTTCAAAAGGACACTGTCCGCTATGGCTAATTCTAGCATTGACGAAGTTGCCTCAACTGGACCTGGTATTCGCTTGTTCCACCTCTATGTTTACCATGTCACCAACTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATAATTCTGGATTAGCATCATATGTTGCTGGACTATTTGACCGCTCTTTTAGTGGGAAGGTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146
Pfam Domains
Protein Families
FMN_dh

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

6.88

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 2 cut(s) 152, 334
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 35, 262
AgsI TTSAA 3 cut(s) 138, 250, 260
AjnI CCWGG 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 276
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 35, 262
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspS9I GGNCC 2 cut(s) 104, 193
AsuHPI GGTGA 2 cut(s) 103, 225
AvaII GGWCC 2 cut(s) 104, 193
BbsI GAAGAC 1 cut(s) 5
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 2 cut(s) 104, 193
BmgT120I GGNCC 2 cut(s) 104, 193
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 5
BsaBI GATNNNNATC 1 cut(s) 307
BsaI GGTCTC 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 307
BseBI CCWGG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 307
BseMII CTCAG 2 cut(s) 15, 80
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 2 cut(s) 152, 334
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 16, 81
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 336
BsrI ACTGG 1 cut(s) 195
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 24, 89
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 104, 193
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 2 cut(s) 101, 229
CviJI RGCY 2 cut(s) 5, 160
CviKI_1 RGCY 2 cut(s) 5, 160
DdeI CTNAG 2 cut(s) 24, 89
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 104, 193
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 104, 232
FaiI YATR 6 cut(s) 102, 157, 221, 230, 313, 315
FatI CATG 2 cut(s) 100, 228
FauNDI CATATG 1 cut(s) 313
FspBI CTAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 104, 232
HinfI GANTC 1 cut(s) 10
HphI GGTGA 2 cut(s) 103, 225
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 24, 89
Hsp92II CATG 2 cut(s) 104, 232
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 176, 182, 209, 285, 306
LweI GCATC 1 cut(s) 317
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 231
MalI GATC 1 cut(s) 270
MbiI CCGCTC 1 cut(s) 336
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 5
MflI RGATCY 1 cut(s) 268
MluCI AATT 4 cut(s) 35, 162, 262, 295
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 5 cut(s) 19, 24, 34, 195, 226
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
NdeI CATATG 1 cut(s) 313
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 104, 232
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 104, 193
PsuI RGATCY 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 218
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 104, 193
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 197
SetI ASST 4 cut(s) 45, 198, 218, 354
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 1 cut(s) 317
SinI GGWCC 2 cut(s) 104, 193
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 4 cut(s) 35, 162, 262, 295
SsiI CCGC 2 cut(s) 152, 334
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 149
TasI AATT 4 cut(s) 35, 162, 262, 295
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 231
TspRI CASTG 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 104, 193
XapI RAATTY 2 cut(s) 35, 262
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.