Rh5DG155200

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000887
Physical Location & Seq
Reverse (-)
15820347 .. 15820921
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG155200.1

Sequence Viewer

Length: 282 bp
ATGCCTTCAACACATGGAGTGTACTTAGAACCACCTATCATTCACTTTGCAGTATTAAAAGCACCTGGGATGGATGTGCTGAAGGTTTCCTTGAGTACACCACAAGAAATAGCAGATGGTGTTTCAGTATGGGAATGGTCTGGTGCCGCCTTAGATGAGGGAGCTGATGCATCGAAATGGTTTTCAGATTATCTAGGGAAACCTAGTCGATTTGTCCGCTTTAATGCAGGTAGAGTTTATCGTGGTGCTTTCAAAGAATCAGGCACTGAGTGCACCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

5.56

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 18 - 68 1.7e-08 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 2 cut(s) 147, 217
AcuI CTGAAG 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 2 cut(s) 23, 97
AgsI TTSAA 2 cut(s) 9, 253
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 275
Alw44I GTGCAC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 266
ApaLI GTGCAC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 2 cut(s) 64, 110
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 3 cut(s) 194, 204, 280
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 2 cut(s) 157, 179
BpuEI CTTGAG 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 75, 79
BseMII CTCAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 275
BspACI CCGC 2 cut(s) 147, 217
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 25, 151, 267
BstF5I GGATG 2 cut(s) 75, 79
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 75, 79
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 266
Csp6I GTAC 2 cut(s) 22, 96
CviAII CATG 1 cut(s) 14
CviJI RGCY 1 cut(s) 164
CviKI_1 RGCY 1 cut(s) 164
CviQI GTAC 2 cut(s) 22, 96
DdeI CTNAG 3 cut(s) 25, 151, 267
DraIII CACNNNGTG 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 172
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 130
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 82, 86
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 3 cut(s) 194, 204, 280
GluI GCNGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 17
HinfI GANTC 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 22, 98, 273
Hpy188I TCNGA 1 cut(s) 187
Hpy8I GTNNAC 3 cut(s) 22, 98, 273
HpyAV CCTTC 2 cut(s) 15, 76
HpyCH4V TGCA 4 cut(s) 50, 170, 227, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 3 cut(s) 25, 151, 267
Hsp92II CATG 1 cut(s) 17
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 51, 78, 126, 213, 246
LweI GCATC 2 cut(s) 157, 179
MaeI CTAG 3 cut(s) 194, 204, 280
MhlI GDGCHC 1 cut(s) 275
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 2 cut(s) 56, 222
MslI CAYNNNNRTG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 270
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 172
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 23, 97
RsaNI GTAC 2 cut(s) 22, 96
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 2 cut(s) 56, 222
SatI GCNGC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 1 cut(s) 275
SetI ASST 7 cut(s) 37, 67, 87, 166, 205, 232, 281
SfaNI GCATC 2 cut(s) 157, 179
SmiMI CAYNNNNRTG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SsiI CCGC 2 cut(s) 147, 217
SspMI CTAG 3 cut(s) 194, 204, 280
StyD4I CCNGG 1 cut(s) 64
TaqI TCGA 2 cut(s) 173, 208
TatI WGTACW 2 cut(s) 21, 95
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 56, 222
Tru9I TTAA 2 cut(s) 56, 222
TscAI CASTG 1 cut(s) 271
TspRI CASTG 1 cut(s) 271
VneI GTGCAC 1 cut(s) 271
XspI CTAG 3 cut(s) 194, 204, 280
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.