Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

76104704 .. 76106085

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG443300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTTGTTTTGTTGCGGATTCTTAACCTTGTTATAGACACTGTCCACTGGCTAATTCCAGCATTGAAGAAGTTGCCTCAACAGGACCTGGTGTTCAAAGACAGGAATCTGGTTACACGGCTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCTAAGGCTCGGGCGCAGGGACACTGATATCAAGAACAGCATTGTGTTAATGAAATTGCAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGGGATCTGTCATTCGCTTTTCAGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

140

Amino Acids

15.72

Weight (kDa)

10.12

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	28 - 76	3.6e-10	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	2 cut(s)	16, 283
AclWI	GGATC	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	67, 97, 395
AjnI	CCWGG	2 cut(s)	87, 334
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	402
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	89, 336
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	89, 336
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	89, 336
BmsI	GCATC	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	256
BseBI	CCWGG	2 cut(s)	89, 336
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	126, 304
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	2 cut(s)	16, 283
BspCNI	CTCAG	2 cut(s)	127, 303
BspPI	GGATC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	89, 336
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	4 cut(s)	135, 179, 290, 420
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 291
BstNI	CCWGG	2 cut(s)	89, 336
BstSCI	CCNGG	2 cut(s)	87, 334
BstV1I	GCAGC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	4 cut(s)	39, 46, 165, 198
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	85
CsiI	ACCWGGT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	6 cut(s)	52, 121, 134, 143, 184, 294
CviKI_1	RGCY	6 cut(s)	52, 121, 134, 143, 184, 294
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	4 cut(s)	135, 179, 290, 420
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	87, 334
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	1 cut(s)	343
FaiI	YATR	6 cut(s)	35, 262, 264, 341, 362, 399
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	339
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	416
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	19, 106, 245, 364
Hpy166II	GTNNAC	2 cut(s)	46, 368
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	208, 249
Hpy8I	GTNNAC	2 cut(s)	46, 368
HpyAV	CCTTC	2 cut(s)	123, 292
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 291
HpyF3I	CTNAG	4 cut(s)	135, 179, 290, 420
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	302
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	266
MabI	ACCWGGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	112, 146
MalI	GATC	1 cut(s)	304
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	1 cut(s)	302
MboII	GAAGA	2 cut(s)	79, 364
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	2 cut(s)	54, 230
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	3 cut(s)	87, 132, 173
MseI	TTAA	3 cut(s)	24, 224, 326
MspA1I	CMGCKG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	89, 336
MvaI	CCWGG	2 cut(s)	89, 336
MwoI	GCNNNNNNNGC	2 cut(s)	140, 291
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	19, 106, 245
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	87, 334
PspGI	CCWGG	2 cut(s)	87, 334
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	294
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	24, 224, 326
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	89, 336
SetI	ASST	4 cut(s)	30, 90, 296, 337
SexAI	ACCWGGT	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	266
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	54, 230
SsiI	CCGC	2 cut(s)	16, 283
StyD4I	CCNGG	2 cut(s)	87, 334
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	2 cut(s)	54, 230
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	19, 106, 245
Tru1I	TTAA	3 cut(s)	24, 224, 326
Tru9I	TTAA	3 cut(s)	24, 224, 326
TscAI	CASTG	4 cut(s)	46, 53, 172, 205
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	4 cut(s)	46, 53, 172, 205
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.