Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003392.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Forward (+)

44271 .. 46081

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003392.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggatgtactgaagatttctatgagtcaaccacaagaaatagcagatggagtttcaatatgggaatggtctggtgctgccttagatgagggagctgatgcatcaaaatggttttcagactatcttgggaaacctagtcgacttgttcgctttaatgcagcttcagaaactagacctgtgaaaccgtccttttggactcataaacctgtggaacctgaatatgctggggggaagcaaatcatgttctccgacctttttccatacttgatagcgtctcagataccttcggtgaatcaagagactggcattcgaggaactgaaccaaatgaaactctgaagaaatttcgatccgatgcaattgtgtatccatctcggaaacagcggagaagggtctacttcgggcagtatctagtttgcaaagactctctgattgctggcgtgaagggaaatgtcataaaggttggagatcttgttcatgtcctcaacatggtttcctctgctgatgaagttccggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOSC MOSC_N

Protein Analysis

172

Amino Acids

19.21

Weight (kDa)

6.75

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	139, 393
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	3 cut(s)	32, 147, 356
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	1 cut(s)	57
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	2 cut(s)	95, 161
AluI	AGCT	2 cut(s)	95, 161
Alw26I	GTCTC	2 cut(s)	279, 293
AlwI	GGATC	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	77, 158
ApoI	RAATTY	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	64, 170
BccI	CCATC	2 cut(s)	41, 376
BciVI	GTATCC	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	279, 293
BfaI	CTAG	3 cut(s)	135, 171, 410
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	2 cut(s)	78, 159
BlsI	GCNGC	2 cut(s)	79, 160
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	3 cut(s)	88, 110, 343
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	511
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	64, 170
BseYI	CCCAGC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	279, 293
BsmBI	CGTCTC	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	306
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	347, 466
BspACI	CCGC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	347, 466
Bst4CI	ACNGT	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	82, 276
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	350, 469
BstMAI	GTCTC	2 cut(s)	279, 293
BstMBI	GATC	2 cut(s)	347, 466
BstV1I	GCAGC	2 cut(s)	64, 170
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	436
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	3 cut(s)	241, 476, 487
CviJI	RGCY	2 cut(s)	95, 161
CviKI_1	RGCY	2 cut(s)	95, 161
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	82, 276
DpnI	GATC	2 cut(s)	349, 468
DpnII	GATC	2 cut(s)	347, 466
Eco57I	CTGAAG	3 cut(s)	32, 147, 356
EcoT22I	ATGCAT	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	3 cut(s)	244, 479, 490
FaiI	YATR	9 cut(s)	23, 61, 201, 222, 242, 262, 455, 477, 488
FatI	CATG	3 cut(s)	240, 475, 486
FblI	GTMKAC	2 cut(s)	139, 393
Fnu4HI	GCNGC	2 cut(s)	78, 159
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	78, 159
FspBI	CTAG	3 cut(s)	135, 171, 410
GluI	GCNGC	2 cut(s)	78, 159
GsaI	CCCAGC	1 cut(s)	228
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	244, 479, 490
HincII	GTYRAC	2 cut(s)	29, 140
HindII	GTYRAC	2 cut(s)	29, 140
HinfI	GANTC	4 cut(s)	25, 196, 292, 422
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	29, 140, 394
Hpy188I	TCNGA	8 cut(s)	118, 166, 250, 279, 336, 352, 375, 429
Hpy188III	TCNNGA	2 cut(s)	296, 512
Hpy8I	GTNNAC	3 cut(s)	29, 140, 394
HpyAV	CCTTC	3 cut(s)	294, 381, 436
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	101, 158, 356, 417
HpyF3I	CTNAG	2 cut(s)	82, 276
Hsp92II	CATG	3 cut(s)	244, 479, 490
Kpn2I	TCCGGA	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	347, 466
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	57, 189, 210, 219, 228, 288, 420
Lsp1109I	GCAGC	2 cut(s)	64, 170
LweI	GCATC	3 cut(s)	88, 110, 343
MaeI	CTAG	3 cut(s)	135, 171, 410
MalI	GATC	2 cut(s)	349, 468
MboI	GATC	2 cut(s)	347, 466
MboII	GAAGA	2 cut(s)	25, 349
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	2 cut(s)	341, 357
MlyI	GAGTC	3 cut(s)	34, 190, 416
MmeI	TCCRAC	2 cut(s)	273, 442
MnlI	CCTC	4 cut(s)	82, 305, 491, 505
Mph1103I	ATGCAT	1 cut(s)	103
MroI	TCCGGA	1 cut(s)	511
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	306
NdeII	GATC	2 cut(s)	347, 466
NlaIII	CATG	3 cut(s)	244, 479, 490
NlaIV	GGNNCC	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	79, 160
PleI	GAGTC	3 cut(s)	33, 190, 416
PpsI	GAGTC	3 cut(s)	33, 190, 416
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	106
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	78, 159
Sau3AI	GATC	2 cut(s)	347, 466
SchI	GAGTC	3 cut(s)	34, 190, 416
SetI	ASST	9 cut(s)	97, 136, 163, 178, 208, 217, 255, 286, 462
SfaNI	GCATC	3 cut(s)	88, 110, 343
SmiMI	CAYNNNNRTG	1 cut(s)	106
Sse9I	AATT	2 cut(s)	341, 357
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	3 cut(s)	135, 171, 410
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	139, 310, 346
TasI	AATT	2 cut(s)	341, 357
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	2 cut(s)	77, 158
TspDTI	ATGAA	3 cut(s)	342, 464, 519
XapI	RAATTY	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	139, 393
XspI	CTAG	3 cut(s)	135, 171, 410
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.