Rroxscaffold_7G00205660

peroxisomal (S)-2-hydroxy-acid oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000887
Physical Location & Seq
Forward (+)
55260996 .. 55262455
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205660.1

Sequence Viewer

Length: 654 bp
ATGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGCTTGCAGAATCAGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGTTGGCTGACTATTTTGAGGCTCGAATTCTCATTCGCAACCGGATAGGAGCAGAGGAAAGAACATTCGATAGCTTAATTGCTGTTCTTAACAAGCTTGCAGATGCTTTCATGAGAATCGCCGATAAGTTCTCTAATGACAGTCCAAGGCTCGGGCGTAGGGACGCCGATATCAAGAACAGCTATCTAATGTTTCTTCACAAGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCGTATGTTGCTGGACTTTTTGCCCGCTCTCTCAGCCTAGAAGATGTGAAATGGCTTCAGCCAATCACTACATTACCAATTCTGTTAAAGGGTGTAATTACTGCTGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTACATATACGCCTCATTTATCTTTCTGATTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146
Pfam Domains
Protein Families
FMN_dh

Protein Analysis

217

Amino Acids

24.54

Weight (kDa)

5.71

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 83 - 207 1.7e-28 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 429
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 138, 355
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 618
AfeI AGCGCT 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 343, 353
AluBI AGCT 7 cut(s) 69, 186, 208, 294, 533, 539, 569
AluI AGCT 7 cut(s) 69, 186, 208, 294, 533, 539, 569
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 263
Aor51HI AGCGCT 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 2 cut(s) 138, 355
AspLEI GCGC 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 263
BanII GRGCYC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 571
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 41
BciVI GTATCC 2 cut(s) 505, 565
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 2 cut(s) 440, 578
BfmI CTRYAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 37
BfuI GTATCC 2 cut(s) 505, 565
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 263
BmsI GCATC 2 cut(s) 205, 410
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 257
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 2 cut(s) 448, 498
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 287, 572
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 287, 572
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 447, 499
BspHI TCATGA 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 544
BspPI GGATC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 429
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 71, 210, 427
BstDEI CTNAG 2 cut(s) 434, 507
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 2 cut(s) 435, 539
BstSFI CTRYAG 1 cut(s) 540
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuI GTATCC 2 cut(s) 505, 565
Cac8I GCNNGC 3 cut(s) 71, 210, 427
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 36
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 617
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 3 cut(s) 94, 223, 563
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 2 cut(s) 434, 507
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 571
Eco31I GGTCTC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 283
Eco47III AGCGCT 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 138
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 3 cut(s) 97, 226, 566
FaqI GGGAC 2 cut(s) 287, 572
FatI CATG 3 cut(s) 93, 222, 562
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 1 cut(s) 540
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 2 cut(s) 440, 578
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 555
HaeII RGCGCY 1 cut(s) 37
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 3 cut(s) 97, 226, 566
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 3 cut(s) 76, 228, 389
HpaII CCGG 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 643
Hpy188III TCNNGA 4 cut(s) 17, 223, 286, 393
Hpy8I GTNNAC 1 cut(s) 318
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 6 cut(s) 41, 73, 212, 525, 542, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 539
HpyF3I CTNAG 2 cut(s) 434, 507
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 3 cut(s) 97, 226, 566
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 3 cut(s) 161, 536, 566
LpnPI CCDG 6 cut(s) 167, 378, 399, 519, 528, 603
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 2 cut(s) 205, 410
MaeI CTAG 2 cut(s) 440, 578
MalI GATC 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 429
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 299, 455, 623
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 6 cut(s) 138, 189, 355, 480, 498, 549
MnlI CCTC 8 cut(s) 46, 49, 82, 124, 160, 502, 607, 638
Mph1103I ATGCAT 1 cut(s) 527
MseI TTAA 3 cut(s) 188, 201, 488
MspI CCGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 435, 539
NdeII GATC 1 cut(s) 361
NlaIII CATG 3 cut(s) 97, 226, 566
NmeAIII GCCGAG 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 527
PagI TCATGA 1 cut(s) 222
PfeI GAWTC 3 cut(s) 76, 228, 389
PkrI GCNGC 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 571
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 3 cut(s) 188, 201, 488
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 1 cut(s) 361
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 2 cut(s) 205, 410
SfcI CTRYAG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 6 cut(s) 138, 189, 355, 480, 498, 549
SsiI CCGC 1 cut(s) 427
SspMI CTAG 2 cut(s) 440, 578
SstI GAGCTC 1 cut(s) 571
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 2 cut(s) 136, 180
TaqII GACCGA 1 cut(s) 36
TasI AATT 6 cut(s) 138, 189, 355, 480, 498, 549
TfiI GAWTC 3 cut(s) 76, 228, 389
Tru1I TTAA 3 cut(s) 188, 201, 488
Tru9I TTAA 3 cut(s) 188, 201, 488
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 211
XapI RAATTY 2 cut(s) 138, 355
XspI CTAG 2 cut(s) 440, 578
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.