Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

14470411 .. 14471287

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTCTTCACAGGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTCGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGAATTAGCATCATATGTTGTTGGACTATTTGCCCGCTCTCTCAGCTGGAAGGATGTGAAATGGCTTCAGTCAATCACTACATTACCAATTCTGATAAAGGGTGTAATTACTGCTGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTGCATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGGTCGTCAAAGCTGCAGAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

113

Amino Acids

12.26

Weight (kDa)

5.85

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	5 - 111	3.8e-29	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	5 cut(s)	138, 233, 239, 269, 326
AluI	AGCT	5 cut(s)	138, 233, 239, 269, 326
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	239, 326
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	226, 313
BciVI	GTATCC	2 cut(s)	205, 265
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	240, 327
BfuI	GTATCC	2 cut(s)	205, 265
BisI	GCNGC	2 cut(s)	240, 327
BlsI	GCNGC	2 cut(s)	241, 328
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	74
BseGI	GGATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	148, 198
BseXI	GCAGC	2 cut(s)	226, 313
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	147, 199
BspMAI	CTGCAG	2 cut(s)	244, 331
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	129
BssMI	GATC	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	134, 207
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 239
BstSFI	CTRYAG	2 cut(s)	240, 327
BstV1I	GCAGC	2 cut(s)	226, 313
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuI	GTATCC	2 cut(s)	205, 265
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	127
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	8 cut(s)	138, 157, 233, 239, 269, 305, 326, 336
CviKI_1	RGCY	8 cut(s)	138, 157, 233, 239, 269, 305, 326, 336
DdeI	CTNAG	2 cut(s)	134, 207
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	1 cut(s)	266
FaiI	YATR	8 cut(s)	23, 106, 108, 223, 227, 264, 285, 302
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	240, 327
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	240, 327
GluI	GCNGC	2 cut(s)	240, 327
GsuI	CTGGAG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	94, 186
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	225, 242, 280, 293, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 239
HpyF3I	CTNAG	2 cut(s)	134, 207
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	236, 266
LpnPI	CCDG	4 cut(s)	124, 219, 228, 303
Lsp1109I	GCAGC	2 cut(s)	226, 313
LweI	GCATC	1 cut(s)	110
MalI	GATC	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	5 cut(s)	55, 95, 180, 198, 249
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	202, 307, 325
Mph1103I	ATGCAT	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	135, 239
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	241, 328
Psp124BI	GAGCTC	1 cut(s)	271
PstI	CTGCAG	2 cut(s)	244, 331
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	271
SatI	GCNGC	2 cut(s)	240, 327
Sau3AI	GATC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	8 cut(s)	17, 140, 221, 235, 241, 271, 318, 328
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	240, 327
SfuI	TTCGAA	1 cut(s)	51
Sse9I	AATT	5 cut(s)	55, 95, 180, 198, 249
SsiI	CCGC	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	271
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	55, 95, 180, 198, 249
TfiI	GAWTC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	239, 326
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.