Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

14473188 .. 14475164

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007195

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTGAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCACTAAGGTCTTTGGAGCAACTCAGTGGCCAGACCCCTGTTTTCTCCGAAGGGTTTATGTGTTGGTGGGTTTTGACTCTGGGTGGGTTGTGGTTGTGTGCAACTCGGTACACTATGAGGTGTTCAAAGACAGGAATCTGGTTACACAACTTGTCAGAAGGGCTGAGAGGGCTGGTTACAAGGCAATAGTCCTCACTGCTGACACTCCAAGGCTCGGGCGTAGGGACGCTGATATCAAGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009853 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0022626 GO:0030054 GO:0031323 GO:0032991 GO:0035821 GO:0042221 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050665 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0055044 GO:0055114 GO:0065007 GO:0072593 GO:0098542 GO:1903409 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

9.94

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	1 - 29	8.9e-06	Ribosomal protein L5
FMN_dh	PF01070	64 - 105	4.7e-10	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	101
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	72, 101
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	69, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	69, 281
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	110, 228
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 103
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	74, 103
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	74, 103
BspCNI	CTCAG	2 cut(s)	109, 229
BsrBI	CCGCTC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	69, 281
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	69, 281
BstDEI	CTNAG	3 cut(s)	78, 96, 237
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 242
BsuRI	GGCC	2 cut(s)	74, 103
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	104, 267
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	182
CviJI	RGCY	6 cut(s)	25, 74, 103, 236, 245, 286
CviKI_1	RGCY	6 cut(s)	25, 74, 103, 236, 245, 286
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	3 cut(s)	78, 96, 237
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	69, 281
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	69, 281
ErhI	CCWWGG	2 cut(s)	69, 281
Esp3I	CGTCTC	1 cut(s)	68
FaiI	YATR	2 cut(s)	132, 189
FaqI	GGGAC	1 cut(s)	311
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	74, 103
HgaI	GACGC	1 cut(s)	308
HinfI	GANTC	2 cut(s)	149, 208
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	122, 230
Hpy188III	TCNNGA	3 cut(s)	19, 31, 310
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	117, 225
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 242
HpyF3I	CTNAG	3 cut(s)	78, 96, 237
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	32, 44, 117, 124, 138, 190, 197, 231
MaeIII	GTNAC	2 cut(s)	214, 248
MalI	GATC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	103
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	184, 234, 275
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
Msp20I	TGGCCA	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	54, 242
NdeII	GATC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	56
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	143
SetI	ASST	4 cut(s)	18, 27, 84, 195
SinI	GGWCC	1 cut(s)	16
SsiI	CCGC	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	69, 281
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	2 cut(s)	104, 274
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	104, 274
VpaK11BI	GGWCC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.