RchiOBHm_Chr1g0318861

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000887
Physical Location & Seq
Forward (+)
6471948 .. 6472872
925 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54911

Sequence Viewer

Length: 330 bp
ATGGATGTACTGAAGATTTCTATGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGTACTTCTATTAAAGATAGACCTCAATGTTATCAGTTTCATGATAAATATGCATAGATCTGATTCTGAAATACTTCTGTTTGCATGTCACAACATTCTTGTTGATGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAATTTCACATTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

109

Amino Acids

12.37

Weight (kDa)

4.44

Isoelectric Point (pI)

57.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 9, 162
AgsI TTSAA 2 cut(s) 57, 326
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 41, 257
BfaI CTAG 1 cut(s) 135
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 1 cut(s) 162
BmsI GCATC 2 cut(s) 88, 110
BoxI GACNNNNGTC 1 cut(s) 299
BseGI GGATG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 215
BspHI TCATGA 1 cut(s) 198
BssMI GATC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 198
Csp6I GTAC 2 cut(s) 8, 161
CviAII CATG 2 cut(s) 199, 243
CviJI RGCY 1 cut(s) 95
CviKI_1 RGCY 1 cut(s) 95
CviQI GTAC 2 cut(s) 8, 161
DdeI CTNAG 1 cut(s) 82
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 32
EcoT22I ATGCAT 2 cut(s) 103, 213
FaeI CATG 2 cut(s) 202, 246
FaiI YATR 7 cut(s) 23, 61, 200, 209, 213, 244, 292
FatI CATG 2 cut(s) 198, 242
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 202, 246
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 2 cut(s) 25, 221
Hpy166II GTNNAC 3 cut(s) 29, 140, 272
Hpy188I TCNGA 5 cut(s) 118, 220, 226, 283, 305
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 29, 140, 272
HpyCH4V TGCA 4 cut(s) 101, 158, 211, 242
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 202, 246
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 88, 110
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 25, 296
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 313
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 2 cut(s) 82, 191
Mph1103I ATGCAT 2 cut(s) 103, 213
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 2 cut(s) 153, 170
MslI CAYNNNNRTG 2 cut(s) 106, 325
NdeII GATC 1 cut(s) 215
NlaIII CATG 2 cut(s) 202, 246
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 2 cut(s) 103, 213
NspI RCATGY 1 cut(s) 246
PagI TCATGA 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PshAI GACNNNNGTC 1 cut(s) 299
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 9, 162
RsaNI GTAC 2 cut(s) 8, 161
RseI CAYNNNNRTG 2 cut(s) 106, 325
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 153, 170
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 162
SchI GAGTC 1 cut(s) 34
SetI ASST 3 cut(s) 97, 136, 183
SfaNI GCATC 2 cut(s) 88, 110
SgeI CNNG 8 cut(s) 47, 84, 137, 147, 155, 211, 255, 269
SmiMI CAYNNNNRTG 2 cut(s) 106, 325
Sse9I AATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 135
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 313
TatI WGTACW 2 cut(s) 7, 160
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 153, 170
Tru9I TTAA 2 cut(s) 153, 170
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 187
XceI RCATGY 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 162
Zsp2I ATGCAT 2 cut(s) 103, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.