Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000011.1

Orthogroup ID

OG0000887

Physical Location & Seq

Genomic Coordinates Reverse (-)

144907 .. 147327

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000011.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgagggaaatcaaggtccagatgctcatcctcaacatctctgtcggcgaaagcggcgatcgtctcaccaaggccgccaaggtcttggagcaactcagcttgaagactagccctactatcgaagacatcaagaacatccttggtgccgattcagtttctcttggagctgcattgagggctgttcatggttggctatgcagccagcgcaaaaggtacttttgtgggaaagatccaaacttgaacgatgagagtcgtgaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

87

Amino Acids

9.64

Weight (kDa)

8.68

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000887)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13080
rosa_chinensis	RchiOBHm_Chr1g0318861 RchiOBHm_Chr2g0118971 RchiOBHm_Chr2g0122571 RchiOBHm_Chr3g0472911 RchiOBHm_Chr4g0396471 RchiOBHm_Chr4g0400401 RchiOBHm_Chr5g0008621 RchiOBHm_Chr5g0010121 RchiOBHm_Chr6g0272271 RchiOBHm_Chr6g0300201
rosa_laevigata	RLG00000000951 RLG00000007194 RLG00000007195 RLG00000008546 RLG00000015503 RLG00000027038 RLG00000034623 RLG00000036553
rosa_multiflora	Rmu_sc0000028.1_g000026 Rmu_sc0000528.1_g000016 Rmu_sc0000791.1_g000044 Rmu_sc0001757.1_g000006 Rmu_sc0003392.1_g000011 Rmu_sc0003517.1_g000011 Rmu_sc0004847.1_g000012 Rmu_sc0004847.1_g000014 Rmu_sc0007181.1_g000001 Rmu_sc0007582.1_g000002 Rmu_sc0014649.1_g000001 Rmu_sc0022708.1_g000002 Rmu_ssc0000011.1_g000044 Rmu_ssc0000218.1_g000069
rosa_roxburghii	Rroxscaffold_1G00027210 Rroxscaffold_1G00065050 Rroxscaffold_2G00091910 Rroxscaffold_2G00097470 Rroxscaffold_2G00111930 Rroxscaffold_3G00218730 Rroxscaffold_3G00223050 Rroxscaffold_3G00266470 Rroxscaffold_6G00392630 Rroxscaffold_7G00156320 Rroxscaffold_7G00205660
rosa_rugosa	Rorug01G0063000 Rorug05G0253800 Rorug05G0530000 Rorug07G0062900
rosa_samantha	Rh1AG036800 Rh1CG230400 Rh3AG181400 Rh4AG000400 Rh4AG121500 Rh5AG443300 Rh5AG529300 Rh5CG168100 Rh5DG154900 Rh5DG155000 Rh5DG155200 Rh6BG021700 Rh6BG021800 Rh6BG116800 Rh6DG144500 Rh7BG456000
rosa_wichuraiana	Rw2G031950 Rw4G021190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	2 cut(s)	54, 75
AclWI	GGATC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	103, 241
AluBI	AGCT	2 cut(s)	99, 167
AluI	AGCT	2 cut(s)	99, 167
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	167, 198
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	205, 238
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	110, 129
BbvI	GCAGC	2 cut(s)	154, 210
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	4 cut(s)	55, 75, 168, 199
BlsI	GCNGC	4 cut(s)	56, 76, 169, 200
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	2 cut(s)	110, 129
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	69, 78, 139
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	69, 78, 139
BseGI	GGATG	2 cut(s)	27, 135
BseJI	GATNNNNATC	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	154, 210
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	58, 229
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	69, 78, 139
BssMI	GATC	2 cut(s)	58, 229
BssT1I	CCWWGG	3 cut(s)	69, 78, 139
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	27, 135
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	2 cut(s)	61, 232
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	58, 229
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 176, 204
BstV1I	GCAGC	2 cut(s)	154, 210
BstV2I	GAAGAC	2 cut(s)	110, 129
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	27, 135
Cac8I	GCNNGC	1 cut(s)	203
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	7 cut(s)	74, 99, 111, 167, 179, 193, 201
CviKI_1	RGCY	7 cut(s)	74, 99, 111, 167, 179, 193, 201
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	60, 231
DpnII	GATC	2 cut(s)	58, 229
Eco130I	CCWWGG	3 cut(s)	69, 78, 139
Eco47I	GGWCC	1 cut(s)	16
EcoT14I	CCWWGG	3 cut(s)	69, 78, 139
ErhI	CCWWGG	3 cut(s)	69, 78, 139
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	188
FaiI	YATR	2 cut(s)	186, 196
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	55, 75, 168, 199
FokI	GGATG	2 cut(s)	14, 122
Fsp4HI	GCNGC	4 cut(s)	55, 75, 168, 199
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	4 cut(s)	55, 75, 168, 199
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	149, 250
HphI	GGTGA	1 cut(s)	58
Hpy188III	TCNNGA	3 cut(s)	19, 130, 254
HpyCH4V	TGCA	2 cut(s)	170, 198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 176, 204
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	58, 229
LmnI	GCTCC	2 cut(s)	88, 164
LpnPI	CCDG	2 cut(s)	32, 215
Lsp1109I	GCAGC	2 cut(s)	154, 210
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	108
MalI	GATC	2 cut(s)	60, 231
MboI	GATC	2 cut(s)	58, 229
MboII	GAAGA	2 cut(s)	115, 134
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	41, 168
MwoI	GCNNNNNNNGC	3 cut(s)	54, 176, 204
NdeII	GATC	2 cut(s)	58, 229
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	56, 76, 169, 200
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	229
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SatI	GCNGC	4 cut(s)	55, 75, 168, 199
Sau3AI	GATC	2 cut(s)	58, 229
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	259
SetI	ASST	5 cut(s)	18, 84, 101, 169, 215
SfaNI	GCATC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	1 cut(s)	108
StyI	CCWWGG	3 cut(s)	69, 78, 139
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	257
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	167, 198
TspDTI	ATGAA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	16
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.